Rhodopseudomonas palustris BisB5: RPD_3194
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Entry
RPD_3194 CDS
T00345
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPD_3194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpd03021
]
RPD_3194
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_3194
Enzymes [BR:
rpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPD_3194
Transcription machinery [BR:
rpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPD_3194
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPD_3194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
ABE40420
UniProt:
Q134R9
LinkDB
All DBs
Position
complement(3539592..3543794)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTA
MIGAEAIRELLKGLELEKIDAQLRVEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSILREGLPGEGKVFGDLAELEHALH
AKVIHLHTKIKYRWDSLDDEGKPYKRLIETTAGRILLGQVLPKSVKLPYETINKLMTKRE
ISSVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPASKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAVRKNASGAESQVNSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTSLGIKMRAIIDAGTVVASLGSRILGRTA
GEDVRDPQTNEVIVKKGELMEERDIEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFEGKVVIKNKAI
ARNGENHNVAMVRNMVVAIVDPDGTERATHRIQYGARMHVDEGDTIKRGHRIAEWDPYSR
PVLTEVEGTIDFEDLIEDQSISETLDESTGIAKRIVIDWRSTRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDVGAKVKPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKEEEAREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TDQGETDMISGEQIDKIEFDQLNVKARDEGKKIATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDRMILDEREKQ
ATIVPPAAPEAEPLALPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaatcatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtcgccggagaagattctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgcaccttcaagcccgagcgtgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgacgctctcccgcgtccgtcgc
gagcgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcc
ttgccgtcgcgtatcgggcagctgctcgacatgacgttgaaggacctcgagcggattctg
tatttcgaatactacgtcgtgctcgagccgggcctgaccgacctcaaggagcgtcagctc
ctgtccgaggaagagtatctgcgcgcccaggaccaatacggccaggacagcttcaccgcc
atgatcggcgccgaagcgatccgcgagttgctgaagggcctcgagctcgaaaagatcgat
gcgcagctgcgcgtcgagatggccgagaccgacagcgacatcaagcacaagaagctcgcc
aagcggctgaagatcgtcgaggcgttccgctactccggcaacaagcccgagtggatgatc
ctgaccgtggtgccggtgattccgccggacctgcggccgctggtgccgctcgacggcggc
cggttcgcgacctccgatctcaacgacctgtaccgccgcgtcatcaaccgtaacaaccgc
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctggccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtgatcgtggtcggt
ccggagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgacgccaagggtctgtcgaccaccgtgaagcaggcgaag
aagctggtcgagaaggagcgtcccgaggtctgggacatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctgggcattcaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtgctgatgatgtctaccaacaacatcctgcatcccgcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactatctgtcgatcctgcgggaa
gggctgccgggcgagggcaaggtgttcggcgatctcgcggagctcgagcacgcgctgcac
gccaaggtcatccacctccacaccaagatcaagtatcgctgggattccctcgacgacgag
ggcaagccgtacaagcgtctgatcgagaccaccgcgggccgcatcctgctcggtcaggtt
ctgccgaagtcggtgaagctgccttacgagaccatcaacaagctgatgacgaagcgcgag
atctcgagcgtcatcgatcaggtctatcgtcactgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttcttcaacgcgttcaaggcgggcatttcgttcggc
aaggacgacatggtcgtgccggcctcgaagtggaagatcgtcgacaccacccgtacgctc
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccacggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccaccgaggaaatcgccaaggagatgatgaaggaa
atctccgcggtccggaagaatgcttcgggcgcggagagccaggtcaactcgatctacatg
atggcccactccggtgcgcgtggttcgccggcgcagatgcgtcagctcgccggtatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggttctcgaatacttcaactcgacccacggcgcccgcaagggtctcgcc
gacaccgcgttgaagaccgcgaactcgggttacctgacccgccgtctggtcgacgtggcg
caggactgcatcatcacccaggatgattgcggcacctcgctcggcatcaagatgcgggcg
atcatcgacgccggcaccgtggtggcgtcgctcggctcccgcatcctcggccgcaccgcg
ggcgaagacgtgcgcgatccgcagaccaacgaggtgatcgtcaagaagggcgagctgatg
gaggagcgcgatatcgaagcgatccaccaggccggcgtccaggaagtgaagatccgctcg
gcgctgacctgcgagctggtcaacggcatctgcggaaagtgctacgggcgcgatctcgcc
cgcggcacgccggtcaaccacggcgaggcggtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagctcacgatgcgtaccttccacatcggcggtgcggcgcagatcaac
gagcaatcggtgatcgagtcgaacttcgagggtaaggtcgtcatcaagaacaaggcgatc
gcccggaacggcgagaaccacaacgtggcgatggtccgcaacatggtcgttgcgatcgtc
gacccggatggcaccgagcgtgcgacccatcgcatccagtacggcgcgcggatgcacgtc
gacgagggcgatacgatcaagcgcggccatcgcatcgccgagtgggacccgtacagccgg
ccggttctgaccgaggtcgaaggtacgatcgatttcgaggatctgatcgaagatcagtcg
atctcggaaacgctcgacgaatcgaccggtatcgccaagcgtatcgtgatcgactggcgc
tcgacccgcggcggcgcggatctgcgtccggcgatcgtgatcaagggcaaggacggcaag
gtgctgaagctggcgcgcggcggcgacgcccgctacatgctgtcggtcgacgccatcctg
tcggtcgacgtcggcgccaaggtcaagccgggcgacattctcgcgcgtatctcgaccgaa
agcgcgaagacccgcgacatcaccggcggtctgccgcgcgtcgcggaactgttcgaggcc
cgcaagccgaaggacgccgcgatcatcgccgaaatcgccggcaccatccggttcggacgc
gactacaagaacaagcgtcggatctcgatcgagccgatggacaaggaagaagaggcgcgc
gagtacctgatcccgaagggcaagcacatccaccttcaggacggcgacatcgtcgaaaag
ggcgacttcatcgtcgaaggcaacccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctatcggctccagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgaccagggcgagaccgacatgatctcgggcgaacagatcgacaagatcgagttcgac
cagctcaacgtcaaagcgagggacgagggcaagaagatcgccacgggaacgccggttctg
ctcggcatcaccaaagcgagcctgcagacccgctcgttcttctcggcggcgtcgttccag
gagaccacccgcgtgctcaccgaagccgccgtcaacggcaaggtggacccgctggaaggc
ctcaaggaaaacgtcatcgtcggccggctgattccggctggcaccggcgcctcgatggcc
aagatccgcgaagtcgcgatgaagcgggatcgcatgatcctcgacgagcgcgagaagcag
gcgaccatcgtaccgccggccgctccggaagccgagccgctggcgctgccgccggccgag
taa
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