Rhodopseudomonas palustris BisB5: RPD_3218
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Entry
RPD_3218 CDS
T00345
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPD_3218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpd03019
]
RPD_3218
03009 Ribosome biogenesis [BR:
rpd03009
]
RPD_3218
Enzymes [BR:
rpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPD_3218
Messenger RNA biogenesis [BR:
rpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPD_3218
Ribosome biogenesis [BR:
rpd03009
]
Prokaryotic type
rRNA helicases
RPD_3218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABE40443
UniProt:
Q134P6
LinkDB
All DBs
Position
complement(3570643..3572718)
Genome browser
AA seq
691 aa
AA seq
DB search
MPFLTTPPPLARALAERNYLEATPVQSAVLAPEAAGRDLLVSAQTGSGKTVAYGLAIARD
LLGDSERFSSAAAPLALIVAPTRELALQVHRELGWVYGYAGARVVSCVGGMDPRREQREL
AEGAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPATRR
TLLFSATLPRGIIALAKTYQHDAFRIEVEGREGGHADIEYRAMRIAPSDVEHAVVNTLRF
VESPSAIVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTQALNSLRDGRARVCVAT
DVAARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLN
LAGIEAIWGTAPQADEIRVLDQQRMTQDTLFTDEISPEDQALAQVLLAERTAEEIAIALA
RLYRARLPSPEDILDPGQANARGRDDRASPKGARAPREERDYGPRDSGPRARSAKAGQKH
AMTDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAFAAEDF
AAQIKRPDKDDNIRIEPLIGAKPIEPAADKPAYKPHDGKKSERETRRSKRPDPWTPLSGK
ADGEARRETGTADTSHGAPRGKSFDDQRTPRAAKDAGVKESGFKKEGFKKDGFKKPKSRD
DKPAYVSKARRADPSAPSPGFKKKAKKKFRD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgccattcctgaccacccccccgccgctcgcccgagctctggcggagcgcaattatctt
gaagcaacgccggtgcagagcgcggtgctggcgcccgaagcggccggccgcgatctgctg
gtgtcggcgcagaccggctccggcaagaccgtcgcctatgggctggcgatcgcccgtgac
ctgctcggcgattccgagcggttttcatccgccgccgcgcctttggcgctgatcgtggcg
cccacccgcgaactcgcgctgcaggttcatcgcgaactcggctgggtctatggctacgcc
ggggcgcgcgtggtgtcgtgcgtcggcggcatggacccgcgccgcgagcagcgcgaactg
gccgagggcgcgcatatcgtggtcggcaccccggggcggctgtgcgaccatctgcgccgc
aaccggctcgacgtctcgcagctgaaggccgtggtgctcgacgaggccgacgagatgctc
gatctcggctttcgcgaggatatggagttcatcctcaagaccacgccggccacccgccgc
acgctgctgttctccgcgacgctgccgcgcggcatcatcgcgctggccaagacctatcag
cacgacgccttccggatcgaggtcgaaggccgcgagggtggccacgccgatatcgaatat
cgcgcgatgcggatcgcgccgagcgatgtcgaacacgccgtggtcaacaccctgcgcttc
gtggaatcgccctccgcgatcgtgttctgcaatacccgcaacgcggtgaaccatctgcag
acgtcgctgctggagcgcggattctccgtcgtggcgctgtccggcgaactcacccagaac
gaacgcacgcaagcgctcaactccttgcgcgacggccgcgccagggtttgcgtcgccacc
gacgtcgccgcgcgcggcatcgatctgccgaatctcggcctcgtcatccatgccgatctg
cccaacgatccggaagtgatgcagcatcgctcggggcgcaccgggcgcgccggcaagaag
ggcgtcagtgtcctgctggtgccgccggcacggcggcgacgcgccgaactgctgctcaat
ctcgccggcatcgaagcgatctggggcaccgcgccgcaggccgacgaaatccgcgtcctc
gatcagcaacgcatgacgcaggacactctgttcaccgacgagatctcgcccgaggatcag
gcgctggctcaggtgctgctggccgagcgtacggccgaggagatcgcgatcgcgttggcg
cggctgtatcgagcgcggctgccttcgccggaagacattctcgatcccggccaggccaat
gcccgcggccgcgacgatcgtgcatcccccaagggcgcacgcgcgccgcgcgaggagcgc
gactacggtccgcgtgactccggtccacgggcgcgctcggccaaagcggggcaaaagcac
gccatgaccgatggcgtctggttccgtgcggcgatcggcaagcgcaagaacgccgaggcg
cgctggctgttgccgatgatctgccgccgcggcggcatcgaccgccaggcgatcggcgcg
atccgcattctcgacaccaccaccgagttcgagatcgcggcattcgccgcggaagatttc
gcggcgcagatcaagcgcccggacaaggacgacaatatccggatcgagccgctgatcggc
gccaagccgatcgagccggccgccgacaagcccgcttacaagccgcatgacggcaagaag
tccgaacgcgagacgcgccgcagcaagcggcccgatccgtggactccgttgtcgggcaag
gcggatggcgaagcgcggcgggagaccgggactgccgacacctctcacggcgcgccacgc
ggcaagagcttcgacgatcagcggacgccgcgcgccgccaaggatgcaggggtcaaagaa
agcggcttcaagaaagagggcttcaagaaggacgggttcaagaagccgaagtcgcgcgac
gacaagccggcctatgtcagcaaggcgcgccgcgccgatccgtctgccccgagccccggt
ttcaagaagaaagccaagaagaagtttcgcgactga
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