Rhodopseudomonas palustris BisB5: RPD_3511
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Entry
RPD_3511 CDS
T00345
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPD_3511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpd03019
]
RPD_3511
Enzymes [BR:
rpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPD_3511
Messenger RNA biogenesis [BR:
rpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPD_3511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ABE40734
UniProt:
Q133K5
LinkDB
All DBs
Position
3901271..3902719
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AA seq
482 aa
AA seq
DB search
MERTNLLTSFQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTA
SFALPILHRILADRIKPQPKNCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVP
MGRQVRSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPA
MLAQILQQDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTG
ELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEE
VGYLRDIEKLIRVALPKEDHRTPGAKPAPSTAPQRGGQRNGGSPYPARGGDAAPGSNGPR
RRRRAGGPTTGRHADARHPEAARHEPAARPQHGGQAEGLQGVAFLQRKNRPAQKTTTQRP
QR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaccaatcttttgacctcgtttcaggatttcggcctcgccgatcccatctcc
cgtgcgcttcaggaagaaaactacaccatcccgacgccgatccaggcgcagaccattcct
ctcgccctcgccggccgcgacgtcgtcggcattgcccagaccggcaccggcaagaccgcc
tcttttgcgctgccgatcctgcaccgcatcctcgcggaccgcatcaagccgcagccgaag
aactgccgcgttctggtgctgagcccgacccgcgaactctccgggcagatcctcgacagc
ttcaacgcctatggccgccacatccgcctcagctccacgctggcgatcggcggcgtgcca
atgggccgccaggtccgctccctgatgcagggcgtggaagttctggtcgcaaccccgggc
cgcctgctcgacctcgtgcagagcaacgcgctgcggctcggccaggtcgagttcctggtg
ctcgacgaagccgaccgtatgctcgacatgggcttcatcaacgacatccggaagatcgtc
gccaagctgccgatcaagcgccagacgctgttcttctcggccaccatgccgaaggacatc
gccgatctcgccgagcagatgctgcgcgatccggcccgtgtcgcggtgacgccggtggcg
tcgaccgtggagcgcatcaaccagcgcgtgatccatctcgatcactccgccaagccggcg
atgctcgcccagatcctgcagcaggacggggtcaaccaggcgctggtgttcacgcgcacc
aagcatggcgccgacaaggtggtgaagggcctgcagcgcgccggcatcaccgctgacgcc
atccacggcaacaagtcgcagaactatcgcgagcgggtgctcgcggcgttccgcaccggt
gagctgcgcacgctggtcgcgaccgatatcgccgcgcgcggcatcgacgtcgacggcgtc
tcgcacgtcgtcaatttcgacctgccgaacatccccgagacctatgtccaccgcatcggc
cgcaccgcgcgcgccggcgccgagggcaccgcgatctcgctgtgcgccggcggcgaagag
gtcggctatctgcgcgacatcgagaagctgatccgtgtcgcactgccgaaggaagaccat
cgcacgccgggcgccaagccggccccgtcgacggcgccgcaacgcggcggccagcgcaat
ggcggctcgccctatccggcccgcggcggcgacgctgcgcccggatcgaacggcccgcgg
cgccgacgtcgcgccggcggcccgacgaccggacgccatgcggacgcccgccatcccgaa
gccgcccgccacgaacccgcggcgcggccgcagcacggcggtcaggctgaaggcttgcag
ggcgtcgcgtttttgcagcgcaaaaatcgtcccgcccaaaagaccaccactcaacgaccg
caacgctga
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