Rhodopseudomonas palustris BisB5: RPD_3552
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Entry
RPD_3552 CDS
T00345
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd00061
Fatty acid biosynthesis
rpd00071
Fatty acid degradation
rpd01100
Metabolic pathways
rpd01212
Fatty acid metabolism
rpd02024
Quorum sensing
rpd04146
Peroxisome
Module
rpd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RPD_3552
00071 Fatty acid degradation
RPD_3552
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RPD_3552
09145 Cellular community - prokaryotes
02024 Quorum sensing
RPD_3552
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rpd01004
]
RPD_3552
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rpd04147
]
RPD_3552
Enzymes [BR:
rpd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RPD_3552
Lipid biosynthesis proteins [BR:
rpd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RPD_3552
Exosome [BR:
rpd04147
]
Exosomal proteins
Exosomal proteins of breast milk
RPD_3552
Exosomal proteins of breast cancer cells
RPD_3552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ABE40775
UniProt:
Q133G4
LinkDB
All DBs
Position
complement(3948818..3950470)
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AA seq
550 aa
AA seq
DB search
MTHPGEQFYPEGVRWDAPIAKGTLPDLLAEAAQQFGPRPALEFRDRQISYTKLHDLAGTA
AAALLRAGYGAGSSVALFLGNTPDHPINFFGALKAGARIVHLSPLDGERALSHKLTDSGA
RVLITTDSAALLPMALKFLDKGLLDRLIVCADDDWGAVGNPHAALPVDPRVVRYADFVRD
AQQPASWPEVSPDDIALLQYTGGTTGLPKGAMLTHANLTSAVSIYDVWTLVRGEGVQRVI
CVLPLFHIYALTVILLRCLKMGDLISLHQRFEVAAVFRDIEEKRATAFPGVPTMWIALAN
DPSLESRDLSSLTMAGSGGAPLPVEVARLFERKTKLKLKSGWGMTETCSPGTGHPPEGPD
KPGSIGLMLPGIEIDVVALEDSKKVLPPGAVGELRIRGPNVTKGYWNRPQETAESFVGDR
FLTGDIGYMDPDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPAVQEVIVIGIPDAYR
GEAAKAFITLRAGAAPFTVEELRDALAGKLGKHEYPAAVEFVAELPRTPVGKLSRHELRN
QLSKSTNQSQ
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgacccatcccggcgagcagttctatcctgaaggcgtgcgctgggatgcgccgatcgcg
aagggcacattgccggatctgttggcggaggcggcgcagcaattcgggccgcggccggcg
ctggagttccgcgatcggcagatcagctacacgaagctccacgatctggccgggacagcc
gccgcggcgctgctacgcgccggatacggcgccggctcctcggtcgcgctgtttctcggc
aacacgcccgaccacccgatcaatttcttcggcgcgctgaaggcgggcgcccgcatcgtg
catctgtcgccgctcgacggcgagcgcgcgctatcgcacaagctcaccgattccggcgcg
cgcgtgctgatcaccaccgactccgcggcgctgctgccgatggcgctgaagttcctcgac
aagggtctgctcgaccgcctgatcgtctgcgccgacgacgattggggcgcggtcggcaat
ccgcacgccgcgctgccggtcgatccgcgcgtcgtgcgctatgcggatttcgtcagggac
gcgcagcagcccgccagttggccggaggtctcgcccgacgacatcgcgctgctgcaatac
accggcggcaccaccggcctgccgaagggggcgatgcttacccacgccaacctgacctcg
gcagtgtcgatctacgatgtctggactctggtacgcggcgagggcgtccagcgcgtgatc
tgcgtgttgccgctgttccacatctacgcgctgacggtgattctgctgcgctgcctgaag
atgggcgacctgatctcgctgcatcagcgcttcgaggtcgccgcggtgttccgcgacatc
gaggagaaacgcgccaccgcatttcccggcgtcccgacgatgtggatcgcgctcgccaac
gatccgtcgctggagagtcgcgatctgtcgtcgctgacgatggcgggctcaggcggcgcg
ccgctgccggtcgaagtcgcgcggctgttcgagcgcaagaccaagctcaagctcaagagc
ggctggggcatgaccgagacctgctcgcccggcaccggccatccgccggaaggcccggat
aagcccggctcgatcggattgatgctgccgggaatcgagatcgacgtcgtcgcgctcgag
gattcgaaaaaggtacttccgcccggcgcagtcggcgagctcaggatccgcggcccgaac
gtcaccaaagggtactggaaccggccgcaggaaaccgcggagtcgtttgtcggcgaccgt
ttcctcaccggcgatatcggctatatggacccggacggctatttctttctggtcgaccgc
aagaaggacatgatcatctccggcggtttcaacgtctatccgcagatgatcgaacaggcg
atctatgaacaccccgcggtgcaggaagtgatcgtgatcggcatccccgacgcttatcgc
ggcgaggcggcgaaggcgttcatcacgctgcgcgccggtgcggccccgttcacggtcgag
gagctgcgcgacgccctcgccggcaagctcggcaagcacgagtatccggccgctgtggaa
ttcgtcgccgaattgccgcgcaccccggtcggcaaattgtctcgccacgaactacgcaac
cagctttccaaatccaccaaccagagccaatag
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