Rhodopseudomonas palustris BisB5: RPD_4105
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Entry
RPD_4105 CDS
T00345
Name
(GenBank) Exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RPD_4105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_4105
Enzymes [BR:
rpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
RPD_4105
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RPD_4105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ABE41324
UniProt:
Q131B5
LinkDB
All DBs
Position
4569989..4571599
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AA seq
536 aa
AA seq
DB search
MARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHSSGHCYFALKD
ESAKIEAVIWKGVAGRMRFKPQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGVGALMAL
MEERKKKLGAEGLFDEARKQLLPWLPDVIGVVTSPTGAVIRDILHRLEDRFPRRVLVWPV
KVQGEGSAEQVAAAIHGFNALPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAES
MIPLISAVGHETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSFSRRMMLCWTRG
QDSRRNELRAAARALPAASELLAIPRQRLDTAAAGLPRALRANTHAHHRRFAKAAAGITL
NVLRAQVSHSAQRLGITGERLKHGARATLRHRRDRFDGLAIRLQASKLANEQAQRMQIAR
ERERMQRLAERARRALTTLLDRQQARLTQSGKLLTALSYRGVLARGFALVRDADGHAVHA
AAAVSAGAQLSVEFADGRVSVTADGGHAGEPAKPTTPASKPTQKRTPKPVDQGSLF
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcccgactgctcgcccccgaaaccctcgccaatgtcggcgaattcaccgtctccgaa
ctgtcgcaggcgctgaagcggacggtcgaggacagctatggccatgtccgggtgcgcggc
gaaatctccgggttccgcggcgcgcattcgtccgggcattgctatttcgcgctgaaggac
gagagcgccaagatcgaggcggtgatctggaagggcgtggcggggcggatgcggttcaag
ccgcaggaaggcctcgaggtcatcgccaccggcaagctcaccacctatccgggctcgtcg
aaatatcagatcgtgatcgaggcgctggagcccgccggcgtcggagcgctgatggcgctg
atggaagagcgcaagaagaagctcggcgccgagggcctgttcgacgaagcgcgcaagcag
cttttgccctggctgccggacgtgatcggcgtggtcacctcgccgaccggcgcggtgatc
cgcgacattctccaccggctggaagaccgcttcccgcgccgggtcctggtgtggccggtg
aaggtccagggcgaaggctcggccgaacaggtcgcggccgcgatccacggcttcaacgcg
ctgcccgagggcggcccgatccctcggcccgatctgttgatcgtcgcgcgcggcggcggc
tcgctcgaggatctgtggtcgttcaacgaggaaatcgtggtgcgcgccgcggcggaaagc
atgatcccgctgatctccgcggtcggtcacgagaccgacgtgacgctgatcgatttcgcc
gccgacaagcgcgcgccgacgccgaccgccgccgccgaaatggcggtgccggtgcgtgcc
gaactgttcgtcgaggtgcagagcttttcgcggcggatgatgctgtgctggacgcgcggt
caggattcccgccgcaacgaactccgcgccgccgcccgcgctctgccggccgcaagcgaa
ctgctcgcgatcccgcggcaacggctcgacacggcggcggcggggctgccgcgggcgctg
cgcgccaatacgcatgcgcatcatcgccgcttcgccaaggccgcggcgggcatcaccctc
aacgttctgcgggcgcaggtcagccacagcgcgcagcggctcggcatcaccggcgaacgg
ctgaagcatggcgcccgcgccacgctgcgccatcgccgcgaccgcttcgacggtctcgcg
atccggctgcaggcctcgaaactcgccaatgagcaggcgcagcggatgcagatcgcgcgc
gagcgcgagcggatgcagcggctcgccgagcgcgcgcggcgtgcgctgacgacgctgctc
gatcgtcagcaggcgcgcctgacgcaatccggcaaattgctgaccgccctgtcctatcgc
ggcgtgctggcgcgcggcttcgcactggtgcgcgacgccgacggccacgccgtccatgcc
gccgcagcggtgagcgccggcgcgcaactcagcgtcgaattcgccgacggccgcgtcagc
gtcacggcggatggcggccatgccggcgaaccagcaaagccgacgacgccagcgtccaaa
ccaacgcagaagcgcacaccgaagccggtcgatcaggggtcgctgttctag
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