Rhodopseudomonas palustris BisB5: RPD_4412
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Entry
RPD_4412 CDS
T00345
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPD_4412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpd03019
]
RPD_4412
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_4412
Enzymes [BR:
rpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPD_4412
Messenger RNA biogenesis [BR:
rpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPD_4412
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RPD_4412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABE41628
UniProt:
Q12ZW1
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All DBs
Position
4883159..4885018
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AA seq
619 aa
AA seq
DB search
MTLAASRLDDDLDARALSTLNHVFGLPGFRGHQEQIVRHVAGGGDCLVLMPTGGGKSLCY
QLPALLRDGCGIVVSPLIALMRDQVAGLLEAGVRAAALNSSLSYAEADAIERQLLSGELD
LLYVAPERLLTPRCLSMLARAKLSLFAIDEAHCVSQWGHDFRPEYVGLSAIAEKFPNVPR
IALTATADALTRREITERLGLTEAPCFVSSFDRPNIRYTIVDKQNAPAQLKAFIADKHTG
HSGVVYCLSRAKVEDTAAALCKAGITALPYHAGLPAGTRAANQDRFINEDGVVIVATIAF
GMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDAWMAYGLSDIVQQRRMIDEST
GSEAFKRVSAGKLDALVGLCESTGCRRTRLLGYFGETSTDLQCGNCDNCLSPPKVQDGTV
AAQKLLSCAYRTGQRFGAQHLIDVLLGRLTERVGQFGHDKLSVFGIGGELNEKQWRAVIR
QLVSLGHLLPDSEAFGALKLTETSRTVLKGETQVMLREQTGGRPPRARSRRGDLVGSGAA
RDATAGDPELFAALKAWRAGVARERGVPAYVVLHDATMDGIAAARPRSLDELRGIAGIGD
KKLEHYGAALLAVIDAARR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcgccgcttcccgcctcgacgacgatctcgatgcccgcgcgctgtcgacgttg
aaccatgtgttcggcctgcccggatttcgcggccatcaggagcagatcgtccgccatgtc
gcgggcggcggcgattgtctggtgctgatgccgaccggcggcggcaagtcgctgtgctac
cagctgccggcgctgctgcgtgacggctgcggcatcgtggtgtcgccgctgatcgcgctg
atgcgcgaccaggtcgcggggctgctcgaggccggcgtgcgcgccgcggcgctgaattca
tcgctgtcctacgcggaagccgacgcgatcgagcggcaattgctctctggcgaactcgat
ctgctctatgtcgcgccggagcggctgctgacgccgcgctgcctttcgatgctggcgcgc
gcgaagctgtcgctgttcgcgatcgacgaggcgcattgcgtgtcgcaatgggggcatgat
ttccgcccggaatatgtcggcctgtcggcgatcgccgagaaattcccgaatgtgccgcgg
atcgcgctgaccgccaccgccgacgcgctgacccgccgcgagatcaccgagcggctcggc
ctcaccgaggcgccctgcttcgtgtcgagcttcgaccggcccaatattcgctacaccatc
gtcgacaagcagaatgcgccggcgcagctcaaggcgttcatcgccgacaagcatacaggc
cattccggcgtggtgtattgcctgtcgcgcgccaaggtcgaggataccgcggcggcgctg
tgcaaagcgggcatcaccgcgctgccctatcacgccgggcttccggcagggacgcgcgcg
gccaaccaggaccgcttcatcaacgaggacggcgtggtgatcgtcgccaccatcgcgttc
ggcatgggcatcgacaagccggatgtccgcttcgttgcgcatctcgatctgccgaaaagc
atcgaggcgtattatcaggagaccggccgcgccggccgcgacggcaagccctcggatgcg
tggatggcctatggcctgtccgacatcgtgcagcagcgccggatgatcgacgaatccacc
ggctccgaggcgttcaagcgggtctcggccggcaagctcgacgcgctggtcggcttgtgc
gagtccaccggctgccgccggacgcgcctgctcggctatttcggcgagacctcgaccgat
ctgcagtgcggcaattgcgacaactgcctcagcccgccgaaggtacaggacggcacggtg
gcggcgcagaagctgctgtcctgcgcgtatcgcaccgggcagcggttcggcgcgcagcat
ctgatcgacgtgctgctcggccggctgaccgagcgcgtcggtcagttcggccacgacaaa
ttgtcggtgttcgggatcggcggcgaactcaacgagaagcaatggcgagcggtgatccgg
caattggtgtcgctcggccatctgctcccggacagcgaggcgttcggcgcgctgaagctg
accgagacttcgcgcacggtgctgaagggcgagacccaggtgatgctgcgcgaacagacc
ggcggccgaccgccgcgcgcgcgatcgcgccgcggtgatctggtcggcagcggagcggcg
cgcgacgctaccgccggcgaccccgagctgttcgcggcgctgaaggcgtggcgcgcaggc
gtcgcgcgggaacgcggcgtgccggcctatgtggtgctgcacgacgccaccatggacggc
atcgccgccgccaggccgcgctcgctcgatgagctgcgcggcatcgccgggatcggcgac
aagaagctcgaacattacggcgccgcgctgctggcggtgatcgacgccgcgcgccggtaa
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