Rhodopseudomonas palustris BisA53: RPE_2473
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Entry
RPE_2473 CDS
T00400
Name
(GenBank) Exodeoxyribonuclease I subunit C
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RPE_2473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpe03400
]
RPE_2473
Enzymes [BR:
rpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RPE_2473
DNA repair and recombination proteins [BR:
rpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RPE_2473
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RPE_2473
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RPE_2473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Exonuc_X-T_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ABJ06412
UniProt:
Q07NS2
LinkDB
All DBs
Position
2718462..2719934
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AA seq
490 aa
AA seq
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MGFVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVRSRLLPHVVPHPSALRTNRL
SIERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTS
NNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVA
ATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESEDGFFLTEFFSNQAYHAPVVCLGPD
PDQPNGRLCLRLDVPPEELALMPDEALQAYLSAKPSPVRRLRINASPTLTAFHDAPDLML
NGADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEGQIYDGLLGPDDERRIA
DFHEASWLEALSIVRDLDDERLRIFGRRLIYFGGRSVLPSDLKLIVERDLTDRLVDNAAG
NFTLQQALEETERLLNGEGIDADGILPGYRTYLIDRISRVTEFRAKEFAAATGLPATICS
HVCDYPVKIV
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgtattcttcgacacggagacgacggggcttaggcacggcttcgaccagata
gtgcatttcgcggctatccgcacagataacgacctcaacgagactgatcgattcgaggtt
cgctcgcgcctgttgccgcacgttgttccccacccttcggcactgcggacaaacaggctg
tcgattgagcggctcattgatggtacgctcccatctcactacgaaatggtcagggccatt
cagcgaacgttactggcttggtctccctctattttcgtagggtacaattccatccgtttt
gatgaggagatgctgaggcacgcgttgtttcagacgcttcacccggcgtatctcaccagc
aacaacggcaactgccgtgctgacgcattgggcttgataatggcagccgcgactctttcg
ccggcttgcttggtggttccccttggaccggaggggcgtcctatttttcgcctggatcaa
cttgcatcggtaaatgacctgaaacacgatcaagctcacgatgccatggccgatgttgct
gcaacgcttgatctctgcagattggtgcgagaacgcgctcctgaactatggcagcgtttc
attcgtttctcgaagaaggctactgttggcgattttgttgagtccgaggatggttttttc
ctcacggagtttttcagcaaccaagcgtatcacgcaccggttgtctgcctagggcccgac
ccggatcagcccaatggccggctatgcttacggctggacgtgcctcctgaagagcttgcc
ttaatgcccgacgaggcattgcaggcatatttgtcggcaaagcccagtccagtccgcagg
ctgaggattaatgcctcccctacgctgacggccttccatgatgctccagacctaatgctc
aatggtgccgacctcgatgaattggaagatcgtgcccgtcgccttaaggaggatgctgca
ttccgctctcgaattatatcgctatacgtggcggtgcgcgagtccttcgcaccatcccta
cacgtagaagggcagatctatgacggccttctcggacctgacgacgaacgtcgcatagca
gacttccatgaggcgagttggttggaagccctttccattgttcgagacctggatgatgag
cgccttcgaatatttggccgtcgattgatttatttcggtggacgttcggtcttgccgagt
gatctgaagcttattgttgagcgcgacttaacagaccggcttgttgacaacgctgcaggt
aatttcacgctgcagcaagcgcttgaagagacggaaaggctcttgaatggcgagggtatt
gatgccgacggcattttgcccggctaccgcacctacctcatcgatcgaattagtcgcgtg
acagagttccgtgccaaagagtttgcagccgcgacaggcttgccagccacaatatgctcg
cacgtatgcgattatccggtgaaaatagtttaa
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