Rhodopseudomonas palustris BisA53: RPE_2934
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Entry
RPE_2934 CDS
T00400
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03410
Base excision repair
rpe03430
Mismatch repair
rpe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPE_2934
03430 Mismatch repair
RPE_2934
03440 Homologous recombination
RPE_2934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpe03400
]
RPE_2934
DNA repair and recombination proteins [BR:
rpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RPE_2934
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RPE_2934
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPE_2934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
ABJ06871
UniProt:
Q07MG3
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All DBs
Position
complement(3285434..3287275)
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AA seq
613 aa
AA seq
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MSPPVTALPIETPLAFLGVTRSATGRIWRDRLDIRGTARALAIAQRYQLPEMLARVLAGR
NVEIDAVADFLDPTIRNLLPDPHTVTEMEAAAKRIADAALRGEQVAIFGDYDVDGATSAA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVEAVRGLAQKGATLLVTVDCGTTSLEPLAEAA
KLGMAVVVIDHHQCGEELPIVEALVNPNRPDDLSGLGHLAAVGLVFVTLVAVNRELRQRG
FWTTERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIAMRRRDHVGHTALMDVAR
LNGPPEAWHLGFMLGPRINAGGRIGRADLGVRLLLEGDISEAAKIAAELDRLNSERRVIE
QMAEAQAEAEALASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGG
LGTGSGRSIPGVDLGKAVRQAVIDGVLVKGGGHAMAAGVTLRKDKLAEFRGYIEAALSTD
VARARHANELFIDGAVSARGVTPDFAAMLNRAGPFGSGNPEPVIALPSHQLVYADEVGQA
HLRLRFKSGDGAIVNGIAFRAIGQKLGNALAENRGQLLHVAGSLAIDRWQGSERVQLRVT
DVAVPDPGPAVIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcctcccgtcaccgccttgccgatcgagacaccgctggcgtttctcggcgtgacc
cgttccgccaccggccggatctggcgcgaccggctcgacatccgcggcaccgcccgcgcg
ctggcgatcgcgcagcgctatcaattgcccgagatgctggcgcgggtgctggccggccgc
aatgtcgagatcgacgcggtcgccgatttcctcgatccgaccatccgcaacttgctgccc
gatccgcacaccgtgacagaaatggaggccgcggcgaagcggatcgctgacgcggcgctg
cgcggcgagcaggtcgcgatcttcggcgattacgacgtcgatggcgccacctccgcggcg
ctgctggcctggcatctgcggcattgcgggctcgatccgctgatccatattcccgatcgc
atttttgagggctacggccccaatgtggaggcggtacgcggcctcgcgcaaaagggcgcg
acgctgctggtaaccgtcgattgcggcaccaccagcctggagccgctggccgaagcggca
aaactcggcatggcggtggtggtgatcgaccatcatcaatgcggcgaggaattgccgatc
gtggaggcgctggtcaatccgaaccggcccgacgatctctcgggacttggccatctcgcc
gcggttggcttggtgttcgtcacgctggttgcggtcaatcgtgaactgcgccagcgggga
ttctggaccacggaaaggccggagcccaatctgctcgacatgctgcatcacgtcgcgctc
ggcaccgtcgccgacgtcgcccccttgatcgggctcaaccgcgccttcgtggccaaggga
ttgatcgcgatgcgtcggcgcgatcatgtcggccacaccgcgctgatggacgtggcacgg
ctcaacggcccgccggaggcctggcatctcggcttcatgctggggccgcgcatcaacgcc
ggcggccgcatcgggcgcgccgatctcggcgtgcggctgctgctggaaggcgatatttcc
gaggccgcaaaaatcgcggccgaactcgaccgactcaattccgagcgccgcgtcatcgag
cagatggcggaggcgcaggccgaagccgaggcgctggcctcgctggggctggaagacaag
ggcgcggtgatcgtcaccgcgtcggaaggctggcatcccggcgtggttggtctggtggct
tctaggttgaaagagaaattcggccggccggcctttgcgatcgcgctggagcccggcggc
ctcggcaccggctcggggcgctcgatcccgggcgtcgatctcggcaaggcggtacggcag
gccgtcatcgacggcgtgctggtgaaaggcggcggccacgcgatggccgccggcgtcacg
ctgcgcaaagacaagctcgctgagtttcgcggctatatcgaagccgcactctccaccgac
gtcgcccgtgcccgccatgccaacgagttgttcatcgacggcgcggtgtcggcacgcggg
gtgacgccggacttcgcggcgatgctgaaccgggccgggccgttcggcagcggcaatccc
gagccggtgatcgcgctgccgtcgcatcagctggtctatgccgacgaggttggccaggcg
catctgcggctgcgcttcaaatcgggcgacggcgccatcgtcaacggcattgccttccgc
gccatcggccagaaactcggcaacgcgctggccgagaaccgcgggcagttactgcacgtc
gcgggcagccttgcgatcgaccgctggcagggcagcgagcgggtgcagttgcgggtgacg
gatgtggcggtgcccgatccgggacccgcggtgatccgctaa
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