Rhodopseudomonas palustris BisA53: RPE_2979
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Entry
RPE_2979 CDS
T00400
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPE_2979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpe03019
]
RPE_2979
03009 Ribosome biogenesis [BR:
rpe03009
]
RPE_2979
Enzymes [BR:
rpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RPE_2979
Messenger RNA biogenesis [BR:
rpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPE_2979
Ribosome biogenesis [BR:
rpe03009
]
Prokaryotic type
rRNA processing factors
RPE_2979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
ABJ06916
UniProt:
Q07MB8
LinkDB
All DBs
Position
3341294..3344344
Genome browser
AA seq
1016 aa
AA seq
DB search
MSFPMPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQA
AFIEYGGNRHGFLAFSEIHPDYYQIPMADRQALIEADERAHREEEEESENRSNRRRSRHR
NSRRRGNGERMQSEIVEGASLDPSQAAQPFHDDGVAYDENGAPQPGEHAEAAAPPSPAEN
DQEWQSSDAQPTETPDAEDNIAPFTPAETAFDPALAIAPVAPEAVEQISFVEDAPFPIDE
TVATAEAAASEADARSVDEHDDEDDEDEDDVEEGEDDIVESVGGDDVLEEVPERAFRPRR
QYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSA
QDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKRDFEYLIRMWETVRDMTLKSQAPT
LVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMQMLMPSNVRAVKQYRDGQPLF
SRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNIEA
AEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKISDCLRQDRARIQIGRISHFGLLE
MSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEILMKGATHNLMVRTRTD
VALYVLNHKRGHLRDLENSFKVSLSVLADPTVSGQQSFVIDRGEQVHTLEAAKATMAAQL
AASPAAVDEPYDDEEFEFEPEIETDETVGLADEATAGENESDADGRKRKRRRRRRGRSSD
TRDGAPVREEGDFSIAPINAADATIDGDEGTDEGGDETEDEARTETNGDGERRPRRRGRR
GGRRRRGTGPGEEGLSTAAGDEFNGPLNDDTGFDTEPREQASEEPSTEFVASQPSVPSRE
EPASEPQPSVIADRAERVEEPRAEPAQDDTSSESGKPRRRSTVREKVSFSTEPVAASVGA
DVPSPTPEPASTEASTDAAAPVEAVAPEPEPAADAPASASEPRRAGWWSRRFGGGQ
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagttttccaatgcccaacaaaatgctgatcgatgcgacccatccggaagagacccgg
gtcgtcgtagtgcgtggcaatcgcgtcgaagaatttgatttcgagaccgcccagcgcaag
caactgcgcggcaatatttatctggccaaggtcacccgcgttgaaccgtcgctgcaggcg
gcgttcatcgagtatggcggcaaccgccacggcttcctcgccttcagcgaaatccatccg
gactactaccagatcccgatggccgaccgtcaggctctgatcgaggccgacgaacgcgcg
catcgcgaggaagaggaagagagcgaaaaccgctccaaccgacgccgctcgcgccatcgc
aattcgcgccgccgcggcaatggcgagcggatgcagagcgagatcgtcgagggcgcctcg
ctcgatccgtcgcaggccgcgcagcccttccatgacgacggcgtcgcctacgacgaaaac
ggggcgccacagcccggcgaacacgccgaggcggccgcgccgccctcgcccgccgagaac
gaccaggaatggcagtcatccgacgcgcagccgaccgaaacgccggacgccgaggacaac
atcgcgccgttcacgccggcggagaccgcgttcgaccccgctttggccatcgcgccggtc
gcgcccgaagccgtcgagcagatcagcttcgtcgaggacgccccgttcccgatcgacgaa
accgtcgcaaccgccgaagctgccgcatccgaagccgatgcgcggtcggtcgacgagcat
gacgacgaggacgacgaggatgaggacgacgtcgaggaaggcgaggacgacatcgtcgaa
tccgtcggcggcgacgacgtgctggaggaagtgccggaacgcgccttccgtccgcgccgg
cagtacaagatccaggaagtcatcaagcgccgccaggtgatgctggtgcaggtggtcaag
gaagaacgcggcaacaagggcgcggcgctcaccacctatctgtcgctggccggccgctac
gccgtgttgatgccgaacaccgcccgcggcggcggcatcagccgcaagatcacttcggcg
caggaccgctcgcggctgaaggaagtggtgcaggatctcgacgtgccggaaggcatgggc
atcatcctgcgcaccgccggcgccgcacgcaccaagccggaaatcaagcgcgacttcgaa
tatctgatccggatgtgggaaaccgtccgcgacatgacgctgaagtcgcaggcgccgacg
ctggtctacgaggaaggctcgctgatcaagcgctcgctgcgcgacctctacaacaaggag
atcgacgagattcaggtcgccggcgaagccggctatcaggaagcccgcgacttcatgcag
atgctgatgccgtccaacgtccgggcggtgaagcagtatcgcgacggccagccgctgttc
tcgcggatgggcgtcgagagccagctcgacgcgatgttctcacccaccgtgcagttgcgc
tcgggcggctacatcgtgatcaaccagaccgaagctttggtctcgatcgacgtcaactcg
ggccgctcgacccgtgaacaccacatcgaagacaccgcgctgaagaccaacatcgaggcc
gccgaagaagtcgcaaggcagcttcgcttgcgcgatctcgccgggctgatcgtgatcgac
ttcatcgacatggaggagaagcgcaacaaccgcgcggtcgaacgcaagatcagcgattgc
ctgcggcaggaccgcgcgcggatccagatcggccggatctcgcatttcggcctgttggaa
atgtcgcgccagcggattcgcgccagcgtgctggagagctcgaccgagccctgcccgcat
tgcggcggctccggccacgttcgctcggtctcctcggtggcgctgcagttgctgcgcggc
ctggaagaaattttgatgaagggcgctacccacaacctgatggtgcgcacccgcaccgac
gttgcgctctacgtgctcaaccacaagcgcggtcatctgcgcgatctggaaaacagcttc
aaggtctcgctgtcggtgctcgccgatccaacggtcagcggccagcagtccttcgtgatc
gatcgcggcgagcaggtccatacgctggaggctgccaaggcgacgatggccgcgcagctc
gcggcctctcccgccgcggtcgacgagccgtatgacgacgaggagttcgaattcgagccc
gagatcgagaccgacgagaccgtcggcctcgctgacgaggctacggccggtgaaaacgaa
agcgacgctgacggacgcaagcgcaagcggcggcggcggcggcgcggacgttcttccgat
acgcgcgatggcgcgccggtgcgcgaggaaggcgacttctcgatcgccccgatcaatgcg
gccgatgccaccatcgacggcgatgagggaacggatgaaggcggcgatgagaccgaagac
gaagcccgcaccgagacgaacggcgacggcgagcggcggccgcggcggcgcggacgccgt
ggcggtcgacgtcggcgcggtaccggccccggcgaggaaggcttgtcgacggccgctggc
gacgagttcaatggtcccctgaacgacgacaccggatttgataccgagccgcgggaacag
gcttcggaagagccttcgaccgaattcgtcgcctcgcagccgtccgtgccgtcgcgcgag
gagcctgccagcgagccgcagccgagcgtgatcgcggatcgggccgaacgcgtcgaggag
ccgcgcgccgagccggcgcaagacgacacgtcgagcgaaagcggaaagccccgccgtcgt
tccaccgtgcgcgagaaggtcagcttcagcaccgagccggtcgcggcatcggtgggtgcc
gatgtcccctccccgacgcctgagccggcctcgacggaagcttcaaccgacgccgcggcg
ccggtcgaagccgtggcgcccgagccggagcccgcggccgacgccccggcttccgcttcg
gagccgcgccgcgccggctggtggtcacgccggttcggcggcggtcagtaa
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