Rhodopseudomonas palustris BisA53: RPE_3596
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Entry
RPE_3596 CDS
T00400
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPE_3596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpe03021
]
RPE_3596
03400 DNA repair and recombination proteins [BR:
rpe03400
]
RPE_3596
Enzymes [BR:
rpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPE_3596
Transcription machinery [BR:
rpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPE_3596
DNA repair and recombination proteins [BR:
rpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPE_3596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ABJ07526
UniProt:
Q07KK8
LinkDB
All DBs
Position
complement(4010473..4014675)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEEEYLRAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLETHLRAEMQETDSDIKHKKLAKRLKIVEAFRFSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGLPIIVPSQDIVLGLYYLSILREGLPGEGKLYGEMAEIEHALH
SKVIHLHTKIKYRCEGMDEEGKPVTKWYETTAGRAMLGQVLPKHPRVPFDTINKLMTKKE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPSSKWKIVEDTRTL
AKEFEQQYNDGLITHGEKYNKVVDAWSKCTKKISEDMMTEISAVKKNPKGGEAQINSIFM
MSNSGARGSQDQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITADDCGTKLGIKMRAIIDAGTVVASLASRILGRTA
GEDLREPSTNRIVVKRGTLMEESHVDALQQAGIQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSFIESNFDGKIVIKNKAI
AKNSENLSVAMVRNMVVAVVDADGTERATHRIQYGARMRVDEGDMVKRGQRIAEWDPYTR
PVLTEVEGIIGFEDLVEGQSISETLDESTGIAKRVVIDWRSTRGGADLRPAIVIKGKDGK
VQKLARGGDARYMLSVDAILSVDVGSVVKSGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKEEETREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TDQGETDMISGEQIDKIEFDQINAKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMSKIREVAIKRDKMILDEREKQ
AAAIVPTAPEAEPLALPTPE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagattatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatttcgatcgcgtcgccggaaaagattctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgaaaagtgctcggtcgaagtcacgctcagccgcgtccgtcgc
gagcgcatgggccacatcgagctcgcggcgccggttgcccacatctggttcctgaagtcg
ctgccgtcgcgcatcggcctgctgctcgacatgacgctgaaggatctcgagcggattctg
tatttcgaatactacgtcgttctggagccgggcctcaccgcgctgaaggaccgtcagctg
ctgtccgaggaggaatatctccgggcgcaggacgaatacggccaggattccttcaccgcc
atgatcggcgccgaggcgatccgcgaactgctgaagggcctggagctggagaagctcgag
acccatctgcgcgccgagatgcaggagaccgactccgacatcaagcataagaagctcgcc
aagcggctgaagattgtcgaggcgttccgcttctccggcaacaagccggaatggatgatc
atgaccgtggtgccggtgatcccgccggacctgcggccgctggtgccgctcgacggcggc
cggttcgccacctccgacctcaacgatctgtatcgccgcgtcatcaaccgtaacaaccgc
ttgaagcggctgatggagctgcgcgcgccggatatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cggcaaaacctgctcggcaagcgcgtcgactattccggtcgttcggtgatcgtggtcggt
cccgaactgcggctgcatcagtgcggcctaccgaagaagatggcgctggagctgttcaag
ccgttcatctattcgcggctcgacgccaagggtctgtcgaccacggtgaagcaggccaag
aagctcgtggagaaggagcgtcccgaggtctgggacatcctcgacgaggtcattcgcgag
catcccgtgctgttgaaccgcgcgccgacgctgcatcgcctgggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctgcatcccttggtctgctcggcgttcaac
gccgacttcgacggcgaccagatggcggtccacgtgccgctgtcgctggaagcgcagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaatggtctgccg
attatcgtgccgtcgcaggacatcgtgctcggcctgtattatctctccatcctgcgcgaa
ggcctgcccggcgagggcaagctgtacggcgagatggcggagatcgagcacgcgctgcac
tccaaggtcatccaccttcacaccaagatcaagtatcgctgtgaaggcatggacgaggaa
ggcaagccggtcaccaagtggtacgaaaccacggccggtcgcgccatgctcggccaggtg
ctgccgaagcatccccgggttccgttcgacaccatcaacaagctgatgacgaagaaggaa
atttccggcgtcatcgaccaggtctatcgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtggtgccgtcctcgaagtggaagatcgtcgaggatacccgcacgctc
gccaaggaattcgagcagcagtacaacgacggcctgatcacccacggcgaaaagtacaac
aaggtggtcgacgcctggtcgaagtgcaccaagaagatctcggaagacatgatgacggaa
atttccgccgtcaaaaagaatccgaagggcggcgaagcccagatcaactcgatcttcatg
atgtcgaactccggcgcccgcggttcgcaggaccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggttctcgaatacttcaactcgacccacggcgcccgtaagggtctcgcc
gacaccgcgttgaagaccgcgaactccggctacctgacgcggcgtctggtcgacgtggcg
caggactgcatcatcaccgcggacgattgcggcaccaagctcggcatcaagatgcgcgcc
atcatcgatgccggcaccgtggtcgcctcgctggcgtcgcggattctcggccgcaccgcg
ggcgaggatctgcgcgagccgtccaccaacaggatcgtcgtcaagcgcggcaccctgatg
gaggagagccacgtcgacgcgctgcagcaggccggcatccaggaagtgaagatccgctcg
gcgctgacctgcgaactggtcaacggcatctgcggcaagtgctacgggcgcgatctcgcc
cgcggcaccccggtcaaccacggcgaggcggtgggcgtcatcgccgcgcagtcgatcggc
gaacccggcacgcagctgacgatgcgcacgttccacatcggcggcgcggcgcagatcaac
gagcagtcgttcatcgagtccaacttcgacggcaagatcgtgatcaagaacaaggcgatc
gccaagaacagcgaaaacctctcggtcgccatggttcgcaacatggtggtggcggtggtc
gacgccgacggcaccgaacgcgccacgcaccgtatccaatacggcgcgcggatgcgggtc
gacgagggcgacatggtgaagcgcggtcagcgcatcgccgagtgggatccctacacccgc
ccggtgctcaccgaagtggaaggcatcatcggcttcgaggatctggtcgaaggccagtcg
atctcggagacgctggacgaatccaccggtatcgccaagcgcgtggtgatcgactggcgc
tccacccgcggcggcgcggacctgcgtccggcgatcgtcatcaagggcaaggacggcaag
gtgcagaagctggcgcgcggcggtgacgcccgctacatgctctcggtcgacgcgatcctc
tcggtcgacgtcggctcggtggtgaagtcgggcgacattctcgcgcgtatctccaccgaa
agcgccaagacccgcgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcc
cgcaagccgaaggacgccgccatcatcgcggaaatcgccggcaccatccggttcggccgc
gactacaagaacaagcgccggatatcgatcgagccgatggacaaggaagaggagacccgc
gagtacctcatccccaagggcaagcacatccatctgcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacattctggcgatcaagggcatc
gaggaactcgccgcctatctggtcaacgaaatccaggaggtctatcggctgcagggcgtg
ctcatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaaggtcgagatc
accgatcagggcgagaccgacatgatttcgggcgagcagatcgacaagatcgagttcgac
cagatcaacgccaaggccaaggaagagggcaagaagatcgccaccggaacgccggttctg
ctcggcatcaccaaggcgagcctgcagacccgctcgttcttctcggcggcgtcgttccag
gagaccacccgcgtgctcaccgaagccgccgtcaacggcaaggtggacccgctggaaggc
ctcaaggaaaacgtcatcgtcggccggctgatcccggcaggcaccggcgcctcgatgtcc
aagatccgcgaagtcgcgatcaagcgcgacaagatgattctggacgaacgcgagaagcag
gcggcggccatcgttccgaccgcgcccgaggccgagccgttggcgctgccgacgccggaa
taa
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