Rhodopseudomonas palustris BisA53: RPE_3742
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Entry
RPE_3742 CDS
T00400
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPE_3742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpe03019
]
RPE_3742
Enzymes [BR:
rpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPE_3742
Messenger RNA biogenesis [BR:
rpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPE_3742
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
DUF8086
Motif
Other DBs
NCBI-ProteinID:
ABJ07671
UniProt:
Q07K63
LinkDB
All DBs
Position
4183302..4184774
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AA seq
490 aa
AA seq
DB search
MALGARICNGKNNLLTSFQVFGLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIA
QTGTGKTASFALPILHRMLENRIKPLPKTCRVLVLSPTRELSGQILESFNAYGRHIRLAS
ALAIGGVPMGRQVRSIMPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRMLDMGF
IHDIRKIVAKLPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVDRITQRVIQ
LDHSAKPTVLAQILKQDDVNRALVFTRTKHGADKVVKGLARAGIAAEAIHGNKSQNHRER
VLAAFRTGEILTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGVAI
SLCAGEELAYLRDIEKLIRITLPREDRRTPGHRDTAAKTSPHRGAHAAPHVHAPRGEHAP
GSKAANRRRRPAGGSVAVPTARAETSRHEPSRPQHHGKEGLQGVAFLHRESRAPQPQSQP
QPQRNPRPQR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggcgctcgcatttgtaatggaaagaataatcttttgacgtcctttcaagtt
ttcggcttggccgaaccgctgacccgcgcgctggccgaagagaactacaccacccccacg
ccgatccaggctcaaaccatccccctcgccctcgccggccgtgacgtcgtcggcatcgcc
cagaccggtaccggcaagacggcgtcctttgcgctgccgatcctgcatcggatgctggaa
aaccgcatcaagccgctgccgaaaacctgccgcgtgctggtgctgagcccgacccgcgaa
ttgtccggccagattctcgagagcttcaacgcctatggccgccacatccggctggcgtcg
gcgctggcgatcggcggcgtgccgatggggcgtcaggtgcgctcgatcatgccgggcctc
gacgtgctggttgccacccccggccgcctgctcgatctggtgcagaccaacgcactgaaa
ctgacccaggtcgaattcctggtgctcgacgaagccgaccgcatgctggacatgggcttc
atccacgacatccgcaaaatcgtcgccaagctgccgatcaagcggcagacgctgttcttc
tcggcgaccatgccgaaggacatcgccgacctcgccgagcagatgctgcgcgatccggcg
cgggtcgcggtcaccccggtggcctcaaccgtcgatcggatcacccagcgcgtcatccag
ctcgaccattcggccaagccgacggtgctggcgcagatcctcaagcaggacgacgtcaac
cgcgcgctggtgttcacccgcaccaagcacggcgccgacaaggtcgtgaagggcctcgcc
cgcgccggcattgccgcggaagcgatccacggcaacaagtcgcagaaccatcgtgagcgc
gtgctggcggcgttccgcaccggcgagatcctcactttggtggccaccgacatcgcggcc
cgcggcatcgacgtcgacggcgtcagccacgtcgtcaatttcgacctgcccaacattccg
gaaacctacgtccaccgcatcggccgcaccgcgcgcgccggcgccgagggcgtggcgatt
tcgctgtgcgcgggtgaagagctcgcctatctgcgcgacatcgagaagctgatccgcatc
acgttgccgcgcgaagatcgccgcactcccgggcatcgcgataccgcggcgaagacctcg
ccgcatcgcggcgctcacgcggcgccacacgtccatgcgccgcgcggtgagcacgcgccg
ggatcgaaggcggcaaaccgccgtcgccggcccgccggcggctccgtggcggtgccgacc
gcccgcgccgagaccagccggcacgaaccgtcgcgaccgcagcatcacggcaaggaaggc
ctccagggcgtcgccttcctgcatcgcgaaagccgtgccccccaacctcagtcccaaccc
caaccccaacgcaacccccgaccgcagcgctaa
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