Rhodopseudomonas palustris BisA53: RPE_4818
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Entry
RPE_4818 CDS
T00400
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpe03019
]
RPE_4818
Enzymes [BR:
rpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RPE_4818
Messenger RNA biogenesis [BR:
rpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RPE_4818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
Flavi_DEAD
AAA_30
wHTH-PRTase_assc
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABJ08737
UniProt:
Q07H47
LinkDB
All DBs
Position
complement(5396705..5399320)
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AA seq
871 aa
AA seq
DB search
MDTRVKPAYDAVDVAPPDLHLTRAFDTPLPIDAVLSDLTKTLAANNAAVLVAPPGAGKTT
RVPLALLDAPWLGDRKIIVLEPRRIAARASAERMAATLNERAGDTVGYRVRFGSKISRKT
RIEVVTEGIFTRQILDDPELTGVGAVLFDEFHERSLDADLGLALARDAQQGLREDLRILV
MSATIDGARVASLLGDAPVIASEGRAFPVETRYLGRKPDAPLERQMAEAIAKALRADPGS
VLAFLPGAAEIRRTESQLAERVQDPAVEIVPLFGALDAAVQDRAISPAPKGKRKVVLATS
IAETSLTIEGVRIVVDCGLARVPRYEPDIGLTRLETVRASRAAVDQRRGRAGRIEPGVCY
RLWDEPQTASLAPYTQPEILSADLSSLVLDLAQWGVADPAQLAFLDSPPAPAWKEALSLL
RELGALDADGRITDEGKSLRALALPPRLARMIVDSARLGAGDHAADIAAILTERGLGGDG
VDLEHRLDQFRRDRSQRASAARQMAQRWAAQVASSSPSPLVGEGRGGGYPEARLPLRTLT
PGPSPQGGGELTTGLMLAFAFPDRVAKNRGNGSFVLANGRGAAVEPSAALARAPYLAVAE
LTGTAAAGRILLAAPIALADIEAHFAEQIESRDDISFDRAAMALRGRKRRSLHAITLSEA
PSALKPSEATARVLAEGLVAAGLDKLPWSKALTQWRGRVMFLRAAEGEPWPDLSDAALAE
RREDWLVPALFDKVALKDLSAGDLSDALMGLLPWEQRARLEREAPTHFEAPTGSALAIDY
EAEQGPTIAVRLQELFGLTTHPSVAGGKVPLVLELLSPAHRPVQVTRDLPGFWRGSYAGV
RADLRGRYPRHPWPDDPASAPPTRRAKPRGT
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgggtcaagcccgcgtatgacgctgtagatgttgcgccaccggacctccat
ttgacccgcgctttcgacaccccattgccgatcgatgccgtgctgagcgatcttacaaag
acgctcgcggctaacaacgccgccgtgctggtggcgccgcccggcgccggcaagaccacg
cgggtgccgttggcgctgctcgatgcgccgtggctcggagataggaagatcatcgtgctg
gagccgcgccggatcgcggcccgcgccagcgccgaacggatggcggcgacgctgaatgag
cgcgccggcgacaccgtgggctatcgggtgcggttcggctcgaagatttcgcgcaaaacc
cggatcgaggtggttaccgaaggcatcttcacccggcagattctggacgacccggaactg
accggcgtcggcgcggtgctgttcgacgaattccacgagcgctcgctcgacgccgatctc
gggctggcgctggcgcgcgacgcgcagcaggggctgcgcgaggatctgcgcattttggtg
atgtcggcgaccatcgacggcgcacgggtggcgagcctgctcggcgacgccccggtgatc
gcaagcgagggccgcgcctttccggtcgagacccgctatctcggccgcaaacccgacgcg
ccgctggagcggcagatggccgaggcgatcgccaaagcgctgcgcgccgatccggggtct
gtgctggcgtttttgccgggtgccgccgaaatccgccgcaccgagagccagttggccgaa
cgggtgcaggacccggccgtcgagatcgtgccgctgttcggcgcgctcgacgccgccgtg
caggaccgggcgatttcgccggcgccgaagggcaagcgcaaggtggtgctggcgacgtcg
attgcggagacttcgctgaccatcgagggcgtgcggatcgtggtggattgcggcctcgcc
cgggtgccgcgctacgagccggatatcgggctgacgcgcctggaaaccgtgcgtgcctcg
cgcgccgcggtcgatcagcgccgcggccgcgccggccgcatcgagcccggcgtgtgctac
cggctgtgggacgagccgcagacggcgtcgcttgcgccctacacccagccggaaatcctc
agcgccgacctgtcctcgctggtgcttgatctggcgcaatggggcgtcgccgatcccgca
caattggcgtttctcgattccccgccggcgccggcgtggaaggaagcgctgagcctgctg
cgcgaactcggcgcgctcgatgccgatggccgcatcaccgacgagggcaaaagcctgcgc
gcgctggcgctgccgccgcggctggcgcggatgatcgtcgattccgcccgactcggcgcc
ggcgaccacgccgccgacatcgccgcgatcctcaccgaacgcggcctcggcggcgacggc
gtcgatctcgaacatcggctcgatcagttccgccgcgaccgctcgcaacgcgccagcgcc
gcgcggcagatggcgcagcgctgggccgcacaggtggcctcctcttctccctcccccctt
gtgggggagggtcggggtggggggtaccccgaagcgaggcttccgttgcggaccctcacc
cccggcccctccccacaagggggaggggagctaacgactggcctgatgctggccttcgcc
ttccccgatcgggtggcgaagaaccgcggcaatggcagcttcgtgctggccaatggccgc
ggcgccgcggtggagccgagcgcggcgctggcgcgggcgccgtatcttgcggtggctgaa
ctcaccggcacggcggcggccgggcggatcctgctggcggcgccgatcgccttggccgat
atcgaagcccatttcgccgagcagatcgaatcccgcgacgacatcagtttcgatcgcgcg
gcgatggcgctgcgcgggcgcaagcggcgcagcctgcacgccatcactttgtccgaggcg
ccgtcggcgctcaaaccgtcggaagcgaccgcccgcgtgctggcggagggactggtcgcg
gcggggctcgacaaattaccgtggtcgaaggcgctgacgcaatggcgcggccgcgtgatg
tttttacgcgcggccgaaggtgaaccttggcccgatctgtccgatgccgcgttggcggag
cggcgcgaggattggctggtgccggcgctgttcgacaaggtcgcgctgaaggatctttcc
gccggcgatttgtccgatgcgctgatgggactgctgccgtgggagcagcgggcgcggctg
gagcgcgaggcgccgactcatttcgaagcgccgaccggcagcgcgctcgcgatcgactac
gaggccgagcagggcccgaccatcgcggtgcggctgcaggaattgttcgggctcaccacc
catccctcagtggcgggcggcaaggtgccgctggtgctggaattgctgtcgccggcgcat
cgcccggtgcaggtgacgcgcgacctgccgggtttttggcgcggctcctacgccggcgtg
cgcgccgatctgcgcggccgctatccgcggcatccctggccggacgatccggccagcgcg
ccgccgacccgtcgcgccaaaccgcgcggcacctga
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