Rhodopseudomonas palustris BisA53: RPE_4912
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Entry
RPE_4912 CDS
T00400
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPE_4912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpe03019
]
RPE_4912
03400 DNA repair and recombination proteins [BR:
rpe03400
]
RPE_4912
Enzymes [BR:
rpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPE_4912
Messenger RNA biogenesis [BR:
rpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPE_4912
DNA repair and recombination proteins [BR:
rpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RPE_4912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
HTH_24
ResIII
Hydant_A_N
Sigma70_r4_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ABJ08831
UniProt:
Q07GV3
LinkDB
All DBs
Position
5497749..5499602
Genome browser
AA seq
617 aa
AA seq
DB search
MPAVSRHQPDDLAARSFALLNSVFGLPGFRGNQEKIVTHVASGGDCLVLMPTGGGKSLCY
QLPSLLREGCGIVVSPLIALMRDQVAGLLEAGVRAAVLNSTLSYQEANAVEQQLLDGELD
LLYVAPERLLTPRCLSLLARAKLALFAIDEAHCVSQWGHDFRPEYIGLSAIAEKFPNVPR
IALTATADDLTRREIAERLGLTEAPCFVASFDRPNIRYEIVDKHNAPSQLKAFIDERHAG
DSGIVYCLSRAKVEDTAAALSRAGITALPYHAGLDAGVRAKNQDRFINEDGVVIVATVAF
GMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDAWMAYGLSDIVQQRRMIDEST
GSDAFKRVSIGKLEALVGLCETTGCRRTRLLGYFGETPHEVHCGNCDNCLSPPKVWDGSV
AAQKLLSCAYRTGQRFGAMHLIDVLIGRLTERVTQFGHDKLSVFGIGPELNEKQWRGVIR
QLVALGHLRPDNEAFGALKLTETSRGVLKGESAVMLREQTGGRAPRAKSRRGDLASAPVP
RAAAGDPDLFAALKAWRSEVARTRGVPAYVVLHDATMDGIAAARPRTLDELRRIAGIGDK
KLEHYGAALLALVNRSG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgtctctcgccaccaaccggacgacctcgccgcgcgcagttttgcgctgctg
aattccgtgttcgggctgcccggcttccgcggcaatcaggaaaagatcgtcacccatgtc
gcgtccggcggcgattgcctggtgctgatgccgaccggcggcggcaagtcgctgtgctac
caattgccctccttgttgcgcgaaggctgcggcatcgtggtgtcgcccttgatcgcgctg
atgcgcgaccaggtggcggggctactcgaagccggcgttcgcgccgcggtgctgaattcg
acgctgtcctatcaggaagccaatgccgtcgaacagcaattgctcgacggcgaattggac
ctgctttacgtggcgccggagcggctgttgacgccgcgctgcctgtcgctgttggcgcgg
gcaaaactggcgctgttcgcgatcgacgaggcgcattgcgtatcacaatggggccacgac
tttcgcccggaatatatcgggctgtcggcgatcgccgaaaagtttcccaacgtgccgcgg
atcgcgctgaccgccaccgcggacgatctgacccggcgcgagatcgcggagcggcttggg
ctgaccgaggcgccgtgcttcgtcgccagcttcgaccgccccaacatccgctacgagatc
gtcgacaagcacaacgcgccgtcgcagctcaaggccttcatcgacgaacgccatgcgggg
gattccggcatcgtctattgcctgtcgcgcgccaaggtcgaggacaccgccgccgcgctc
agccgggccggcatcaccgcgctgccctatcacgccgggctcgatgccggcgtgcgggcg
aagaatcaggaccgcttcatcaacgaggatggcgtggtgatcgtcgccaccgtcgccttc
ggcatgggaatcgacaagcccgacgtgcgcttcgtggcgcatctcgatctgccgaaaagc
atcgaagcctattaccaggagaccggacgcgccggccgcgacggcaagccgtcggacgcc
tggatggcctatggcctgtccgacatcgtgcagcagcgccgcatgatcgacgaatccact
ggctccgacgccttcaagcgggtctcgatcggcaagctcgaggcgctggtcgggctttgc
gagaccaccggctgccgccgcaccaggctgctcggctatttcggcgagacgccgcacgag
gtccactgcggcaattgcgacaattgcctgtcgccgccaaaagtctgggacggcagcgtg
gcggcgcaaaaactgctgtcctgcgcctatcgcaccgggcagcggttcggcgcgatgcat
ctgatcgacgtgctgatcggaaggctgaccgaacgcgtcacccagttcggccacgacaaa
ctctcagtgttcggcatcggccccgaattgaacgaaaaacaatggcgcggcgtgatccgg
caattggtggcgctcggccatttgcggccggacaacgaggcgttcggcgcgctgaagctc
accgagacctcgcgcggcgtgctgaagggcgagagcgcggtgatgctgcgcgaacagacc
ggtggccgagcgccgcgcgccaaatcgcggcgcggggatttggccagcgcgcccgttccg
cgggccgctgccggcgatccggatctgtttgccgcgctgaaagcctggcgctccgaggtg
gcaaggacgcgcggcgtgccggcctatgtggtgctgcacgacgccaccatggacggcatc
gccgccgcccggccgcgcacgctggatgagttgcgccggattgccggcatcggcgacaag
aagctggagcattacggcgccgcgctgctggcgctggtcaaccgctcgggatga
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