Candidatus Riesia pediculischaeffi: AOQ87_00865
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Entry
AOQ87_00865 CDS
T10207
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rped Candidatus Riesia pediculischaeffi
Pathway
rped03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rped00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOQ87_00865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rped03021
]
AOQ87_00865 (rpoB)
03400 DNA repair and recombination proteins [BR:
rped03400
]
AOQ87_00865 (rpoB)
Enzymes [BR:
rped01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOQ87_00865 (rpoB)
Transcription machinery [BR:
rped03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOQ87_00865 (rpoB)
DNA repair and recombination proteins [BR:
rped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOQ87_00865 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ARC53244
UniProt:
A0A1V0HK88
LinkDB
All DBs
Position
161380..165408
Genome browser
AA seq
1342 aa
AA seq
DB search
MGLVHTEKKRIRKNFGKRPQVLGVPYLLSIQIDSFSKFINNCGKKSGLESAFHSIFPIRS
YNGNAELRYIEYRLEEPTFDVRECRTRSATYSSSLKVKLRLVVYEKESSKKIQYVRDQEV
YMGEIPIMTENGTFIVNGTERVVVSQLHRSPGVFFDSDKGKTHSSGKILYNARIIPYRGS
WLDFEFDIKDHIFVRIDRRRKLPATVILRAIGYDNEEMLNLFFEKTTFRQDQEGIFFMDL
VPKRLRGETASFDIVSGGKTYVKKGIRITASHVESLEKDNVREIEVPSDYLIGRIVDKSY
FDKSDGKLICSANSKISKEILEDLKRSRNRSIRTLFINDLDRGSYISNTLRIDNTKDRID
ALIEIYRMMRPGEPPTKESAESLFNSLFFSEDRYDLSPVGRMKFDLSLSRERNTESNVLN
NQDIIDVIKKLIDIRDGRGEVDDIDHLGNRRIRSIGEMAENQFRLGLIRVERAVKERLSL
GDLDSLSPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE
RAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLSVYARTNQYGFLETPYRIVRNGVVSN
DIRYLSAIEEGNHIIAQANTMLNEDGSFRTELVTCRNKGESNLFNKTQVEYMDVSTQQIV
SVGASLIPFLEHDDANRALMGANMQRQAVPTLRTEKPLVGTGMESVVAKDSGVTVIAKRS
GTVQYVDSSKIVIKTEKEGHSLQDFGIDMYDLTKYSRSNQNTCINQVPCVSMGDKVRSGE
VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISERVVQEDRFTTIHIQELSCISR
DTKLGPEEITADIPNVGASSLSKLDESGIVYIGAEVIGGEILVGKVTPKGETQLTPEEKL
LRAIFGEKASDVKDSSLRVPNGTSGTVIDVQIFTRDGVKKDKRTLEIEEIRLKEAEKDIL
EELTILESCLFYDVRSFLTKNGIDRVTVDNLVGERLFQIKLADNSLNDVLDRFQKKHHEL
KKQFSEKLCKRRHQIAQGDDLSPGVLKVVKVHLAVKRQVQPGDKMAGRHGNKGVISKISP
IEDMPYDQNGNPVDIVLNPLGVPSRMNIGQILETHLGMAARGIGNKINQMIRSKEKVKNI
KEFIQQAYDIGVGNHQRIDLDELSDEETMDLAHRLKDGLPISTPVFDGAKEHEIKEMLKL
ADLPQSGQITLFDGCTGERFERLVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGASHALQEMLTVKSDDVNGRTKMYKNIVNGEHKMEPGMPD
SFNVLLKEIRSLGINIELEKKR
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgggtttagttcatacagaaaaaaaacgtatcagaaaaaatttcggtaaaagaccacaa
gttctaggtgtaccttatctactatctattcagatagattctttctctaaatttatcaac
aattgcggaaaaaagagcggtttagaatccgccttccattctatatttcccatcagaagt
tataatggaaacgctgaactgagatacatcgaatatcgtctggaagaaccaacattcgat
gtgagagaatgtagaacaaggagtgcaacctactcttcctccttgaaggttaaattaaga
ctagtggtatacgagaaggagtcttctaaaaaaatacagtacgtaagagatcaagaagta
tacatgggagagattccgatcatgactgaaaatggaacttttatcgtcaatggaactgaa
cgggttgtcgtttctcaactgcaccgtagtccaggtgttttcttcgatagcgataaagga
aaaacacattcttcaggaaaaattctatataacgctaggatcataccgtatcgtggatca
tggttagacttcgaatttgatattaaggatcatatattcgtaagaatcgataggagaaga
aagttaccggcgactgtcatattacgtgcaataggttatgacaatgaagagatgttaaac
cttttttttgaaaagaccaccttcaggcaagatcaagaggggatcttcttcatggatttg
gttcccaaaagattacgaggtgaaacagcttccttcgacatcgtaagtggtggaaaaacc
tacgtcaagaaagggatcagaataaccgcatctcacgttgaaagtttagagaaagataat
gttcgagaaattgaagttccatcggattatctaatcggtaggatagttgataaaagttac
tttgataaaagtgacggaaaattgatctgttcagcgaactctaagatatcgaaagaaatt
ttagaagacttgaagagatctcgaaacagatctattcgaacactcttcataaatgatcta
gatcgaggatcctatatctccaacacgttgagaatcgataatacgaaagatcgaatagat
gccttgatagaaatctacagaatgatgaggccaggagaacctcctacaaaggaatcagcg
gaaagtttgttcaacagtctcttcttttctgaagatcgatacgatctatctccggttgga
aggatgaagttcgacctttccctttccagagaaagaaacacagaatctaacgtgttgaac
aatcaagatatcattgacgtgattaaaaaactaattgatattagggatggaagaggagag
gtggatgatatcgatcatttagggaacagaaggatacgttcgattggagagatggcggag
aatcagttcaggttaggactgatcagggttgaaagagccgtaaaggagagattatcattg
ggggatctagactctttatctccccaagacatgatcaatgcgaaaccgatctctgctgct
gtaaaagaattttttggatccagtcaactatctcaattcatggatcagaacaatccctta
tctgaaataactcacaaacgtcgaatttcagctttgggtccgggggggttaactagagag
agagcaggattcgaagtacgggatgttcatccaacacactatggtagaatgtgtccgata
gaaactccggaagggccgaacatagggttgattaattcactttctgtctacgcgagaact
aatcaatatgggtttttagaaactccatatcggatagtgaggaatggggtagttagcaac
gatatccggtatctttccgcaattgaggaaggaaatcatatcatcgcacaggcgaacacc
atgttgaacgaagatggatcatttcggacagaactggtgacctgcagaaacaaaggagaa
tctaacctatttaacaaaacacaggtggagtatatggatgtttctacgcagcaaatcgta
tctgtcggagcatctttgataccgtttcttgaacatgatgatgcaaaccgtgcattgatg
ggcgctaacatgcaaagacaggcggtacctaccttacgaacggagaagccgttggtagga
acgggcatggaaagtgtagtagcaaaagattctggagtaacagtgatcgccaaaagatca
ggaacggtgcaatatgtggattcttccaagatagtgatcaaaacggagaaggaaggtcat
tccttgcaggatttcggaatcgatatgtacgatctgacgaaatattctagatcgaaccaa
aatacatgtatcaatcaagtaccttgcgtttccatgggagataaagtcagatctggagag
gtgttagcagacggtccttccaccgatttaggagagctggctttaggacaaaacatgcgg
gtcgcattcatgccgtggaatggatacaacttcgaagattcgattctaatatcggagagg
gtagttcaagaggatcgattcacaaccatccatatacaggaactatcttgtatctcaagg
gataccaaactaggaccggaagagatcacagcggatattccaaatgttggagcatcatct
ttatccaagttagatgaatctggtatcgtatatatcggagcagaggtgattgggggtgag
atactggttggaaaagtgacaccaaaaggagagactcagcttacccctgaagaaaagttg
ttaagggctattttcggagaaaaagcatccgacgtaaaagattcctctttaagagttccc
aacggaacttcaggtaccgtgatagacgttcaaatattcacaagagatggagtcaaaaaa
gacaagagaactctggagatcgaagaaattcgattaaaagaggcggaaaaagatattctt
gaagaacttactatcctcgaatcttgcctattttacgatgttcgttcttttctcacaaaa
aatggaatagatcgtgtaacagttgacaatctggtcggggaaaggttgtttcaaataaag
ttagcagataattctctaaacgatgtgttggatcgatttcaaaaaaaacaccatgagttg
aaaaaacagttttcagaaaaattatgtaaaagaagacatcagatcgctcagggagatgac
ttatctcctggcgttctgaaagttgttaaagtacatttggccgtaaagagacaggtacaa
ccgggggataagatggccggacgtcacggaaacaagggtgtgatctccaagatcagccct
atagaagatatgccgtatgatcaaaatggaaatcctgtagatatagttttgaacccattg
ggtgttccatctaggatgaatatcgggcaaatcttggaaacacatctagggatggctgcc
cgagggattggaaacaagatcaatcagatgatacggagtaaagagaaagtcaaaaatatc
aaggagtttattcaacaagcttacgacattggtgttggaaatcatcaaaggatagatttg
gatgaactctctgacgaagagactatggacttagcacatcgtctgaaagacggtttaccg
atatctactccagtattcgatggagcaaaagaacatgaaattaaagaaatgttgaaacta
gcagatcttccacaatcgggacagattacattgttcgatggatgcaccggagaacggttt
gagaggttggtcaccgtaggatatatgtacatgttgaagttgaaccatcttgtagatgac
aaaatgcatgctcgttcgacaggttcttacagtttggttacacagcagccattgggagga
aaagcacaattcggaggacagagattcggagaaatggaagtttgggctttagaagcttat
ggtgcctcccacgcgttacaggagatgttaaccgtaaaatcagatgatgtcaatggaagg
acaaagatgtataagaacatcgtcaacggagaacataagatggaacctggtatgccagat
tcttttaatgtcttgttaaaagaaatcagatctttaggaattaatatagagttagagaag
aaacgatag
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