Candidatus Riesia pediculischaeffi: AOQ87_01105
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Entry
AOQ87_01105 CDS
T10207
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rped Candidatus Riesia pediculischaeffi
Pathway
rped03030
DNA replication
rped03430
Mismatch repair
rped03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rped00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOQ87_01105 (dnaE)
03430 Mismatch repair
AOQ87_01105 (dnaE)
03440 Homologous recombination
AOQ87_01105 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rped03032
]
AOQ87_01105 (dnaE)
03400 DNA repair and recombination proteins [BR:
rped03400
]
AOQ87_01105 (dnaE)
Enzymes [BR:
rped01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AOQ87_01105 (dnaE)
DNA replication proteins [BR:
rped03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AOQ87_01105 (dnaE)
DNA repair and recombination proteins [BR:
rped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AOQ87_01105 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
MACPF
GHL6
Motif
Other DBs
NCBI-ProteinID:
ARC53282
UniProt:
A0A1V0HKL8
LinkDB
All DBs
Position
223445..226975
Genome browser
AA seq
1176 aa
AA seq
DB search
MNSAQLNFIHLHVRSDYSISDGLSKIDIIVNRALELNMPAIAVTDRSNLHGMMKFYESSI
SVGIKPIIGADLIIRQESQYDVEVFDITILAKDRIGYQNLVKLISLSYQGGYDIKIGPTI
KRSWLISYGEGLLLLSGGISGDVGKNVLSQNFNELEKSLDFYKTYFHNNYYIEVTRTGKI
DEEKYIQKVIQISKEDNIPLVATNNVRFTNRDDFLAHRIRIAIQGGYILSKSRRDDKQYT
DQQYLRSSQEMENIFQDIPECLRNSIEISKRCNLSFSFKKRLLPTFPSKDVKVKELFINY
ARCGLKRRLIEIYPDYFMREKKRKKYEERLEEEINVIHQMGFSGYFLIVMEFVKWSKQKN
IPVGPGRGSGAGSLVAYSLNITDLDPIQFNLIFERFLNKERISMPDFDIDFCVKKRDLVI
EHVIQKYGKEFVSQIISFGTMTARSVVKDVGRVMCYPYSFTDRVSKLIPFDTGMTIKNAL
STEEHLKKLYNSEEDVKVLLDTAERLEGIVRNISKHAGGVVISPKKITKYFPLYYDPTGE
ISLTHLDKDDIEKFGLVKFDFLGLKTLTVIHDTIKIINHLSCRSKRKFVLSDLNLIPLND
QKCFDLLKSAETTAIFQLESIGMKDLIRKVKPDCFEDIIALIALFRPGPLKSGMVKNFIN
RKNGLEQISYPEKGCHHDLLKPILKNTYGIILYQEQVMQIAQILAGYTLGEADILRRAIS
KKNEKEMKNQRIIFEKRSIKRGVEEKIASRMFDIMEKFAGYGFNKSHSAAYALISYQTLW
LKTYYPSEFMAASMTSEINNIEKISELIDECRRMDIKVLSPDINCGMYFFQVNLHGEIIY
GMGAIKGVGKSLIDKIVDSRQRDGKFLNIFDFCKRMDVKKMNRRIIAKLILSGSFDCFKE
SRTKMLYSLEDVLKMTEQEKKNRSSGQIDMFEKKNYKCSSFLNEKNLCRQGINSTVLHGE
LDTLGFYLTKHPTEHYLSEIKYYTKERTIGDILSRDLSSEGSVTIVGSISSYRSVSFKRY
ERSIKFRKTIGIYTLRDFSGCLEMIVSTEKMKMYQSILKRENILVVTGSIQRNIYTKKNV
MNVHDLMDLNSAREKYVRCISIMSDGGKIDKDSLKKVTDMLNNHRIGNKPVYFFYKKGNN
FEKIRIERDVSITNELISDLRDIRSDGYRFKLCFKN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtgcacaattgaacttcatacatttacatgtacgtagcgattattctatatcg
gatggattatcgaaaatagatatcatagtaaatagggctctggagctgaatatgccagct
atagcagttacagaccgttcgaacttacatggaatgatgaaattttacgaatcttccata
tcagtaggtatcaaacctattatcggtgcggatcttatcatcagacaagagtcgcagtat
gatgtggaagtttttgatataaccatattagcaaaagatcgaataggttatcaaaatctc
gtcaaattaatttccttatcttatcaaggtgggtacgacatcaaaataggtccgacgatc
aaaaggagttggttgatatcgtacggagagggacttttgttgctatcaggaggtatatct
ggtgatgtcggaaagaatgttctatcacagaattttaatgaacttgaaaaaagtcttgat
ttctataagacttattttcataacaactactacatagaggtaaccagaactggaaaaata
gatgaagaaaaatatattcagaaagtcattcagatatctaaagaggataatataccgcta
gtagcaactaataacgtcagatttactaacagagacgactttttagcccacagaattcga
atagccatacaaggtggatacatactttcgaaatctagaagagatgacaagcagtatact
gatcaacagtatctgcgtagttcgcaagaaatggagaatatttttcaagatattccagaa
tgtttaagaaacagcatagagatctctaaacgctgtaatcttagtttttcgtttaaaaaa
cgcttattaccgacttttccaagcaaagatgtcaaagttaaagaactttttatcaactat
gcaaggtgtggtttgaaaagaagattgatcgaaatctatccagattattttatgagagaa
aagaaaagaaaaaaatatgaagaaagattggaggaagaaatcaatgtgatccatcaaatg
ggattttctggatatttcttgatagtaatggaatttgtaaagtggtctaagcaaaagaat
atccctgtcggacctggaaggggatcaggtgcaggttctctagttgcatactctttaaat
attacagatctagatcctattcaatttaacttaatttttgaaagatttttgaacaaagaa
agaatatcgatgccagatttcgatatcgatttttgcgtgaaaaaaagagatcttgtgata
gaacatgtgatacagaaatacggaaaagaatttgtttctcagattatatctttcgggaca
atgaccgctagatctgttgttaaagatgtgggaagagtgatgtgttatccgtacagcttt
acagatcgtgtatctaaattaattccatttgatactggaatgacgatcaaaaatgctcta
tctacagaagagcatttgaaaaaattatataacagcgaagaagatgtaaaagttcttctt
gatacagctgaaagattggagggtatcgtacggaacatcagtaaacacgctggaggagtg
gtaatttctccaaaaaagatcacgaaatattttcctttatattacgatccaaccggtgag
atctcattgacacatctcgataaagatgatattgagaagttcgggttggtcaaattcgat
ttcctagggttaaagacgttgacagtgattcatgataccatcaaaatcattaatcatctt
tcttgtcgttctaaaagaaagttcgtgttatctgatcttaatttaatccctttaaacgat
caaaaatgttttgatcttttgaaatctgcagaaacgactgcgatatttcagttagaatct
atcggaatgaaagatttgatcagaaaagtgaaaccagactgtttcgaagatattatcgct
ttaatcgcacttttccgtcctggtcctctaaaatctggtatggtaaaaaatttcattaac
cgtaaaaatggtttggagcagatatcttatccagaaaaaggatgtcatcatgatctctta
aaaccgatcttgaagaatacgtacggtatcatattatatcaagaacaggtcatgcaaata
gcacagattcttgcaggatatactctgggagaagcagatatcttgagaagagcaataagc
aaaaaaaacgaaaaagagatgaaaaatcagaggatcattttcgaaaaaagatctatcaaa
agaggagtcgaagaaaagatagcttctaggatgttcgatattatggaaaaatttgcagga
tacggattcaacaaatcacattctgccgcctatgctctaatatcttatcagactctctgg
ttaaaaacttattatccatctgaatttatggccgcttcaatgacatcagagatcaataat
atagaaaaaatatctgaattgatagatgaatgtcgaaggatggatattaaagttctatct
cctgatataaactgtggaatgtatttttttcaagttaatctccatggagaaattatttat
gggatgggtgcgatcaagggtgtaggaaagtctctcatagataagattgtagattctcgt
cagagagatggcaaatttttgaacatctttgacttctgcaagagaatggatgtaaaaaaa
atgaaccgtagaataattgcaaaattaatcttatctggatcgtttgattgtttcaaggaa
agtcgaacaaagatgttgtattccctcgaagatgtgttaaagatgacagaacaagaaaag
aagaaccgttcttccggtcagatcgatatgtttgaaaaaaaaaattacaaatgttcgtcc
tttttaaatgaaaaaaatctttgtagacaagggatcaacagtaccgtactacacggagaa
ttggatactttaggtttttatctcacaaaacatcccaccgaacattatctatctgaaata
aaatattatacgaaagaaagaaccataggagatatactatcacgtgatctttcttcagaa
gggtcagttacaatcgtaggttccatatcttcttacagatcggtaagcttcaaaaggtac
gaaagatcgattaagtttagaaaaacaattggaatatatactttaagagatttttccggt
tgtttggagatgatcgtatctactgaaaaaatgaagatgtatcaatctattcttaagaga
gagaacattttggtggttacaggaagtatacaacgaaatatttatacgaaaaaaaacgta
atgaatgtacatgacctgatggatttaaattcagctagagagaaatacgtgagatgtatt
tcgatcatgtcggacggaggtaaaatcgataaggattcattgaaaaaagtcacagatatg
ttgaacaatcatcgcatcggaaataaaccagtttatttcttttataagaagggaaataat
ttcgaaaaaatcaggatagaaagagatgtctctatcacaaacgagttgatatcggatcta
cgagatattcgatcagatggttatcgatttaaattatgcttcaaaaactga
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