Roseovarius pelagicus: N7U68_01655
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Entry
N7U68_01655 CDS
T09340
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rpel
Roseovarius pelagicus
Pathway
rpel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7U68_01655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpel03019
]
N7U68_01655
03009 Ribosome biogenesis [BR:
rpel03009
]
N7U68_01655
Enzymes [BR:
rpel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N7U68_01655
Messenger RNA biogenesis [BR:
rpel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N7U68_01655
Ribosome biogenesis [BR:
rpel03009
]
Prokaryotic type
rRNA processing factors
N7U68_01655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UXX83418
UniProt:
A0ABY6DDY7
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All DBs
Position
105506..108220
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AA seq
904 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMKSDDEDNKPKRRSRGGRGRS
KTDSKAEKTQSDDAVQTAEVAEDAISGMETIDLGDSEEGSSPMERVAETPVEEPEADAAT
AETPDATGGDDHADANQDGVEDDAEGDADGDSDGDKDSKTRASRKDSSIEVVADEDDQDD
IRPPRKPRPKRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARG
GGISRKITNAPDRKKLKEIANEIDVPQGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIR
ELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSHAKNV
RHYADTMPLFARFQVESYLNSMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIE
DTATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQV
SRISGFGLMEMSRQRLRPGMIEATTQPCPSCHGTGLIRSDDNLALSILRQIEEEGVRRRS
REVLVRAPVGIANFLMNQKREHVAQIEARYGLSVRIEGDPSLISPDFTLEKFKTATRAVP
EVTAPVVSVDSSLMADIDESGTQDADPDEAPRADTDTEGGDDKPKKRRRRRRSRSRGGKN
RNDDENGGDNENGNDGNDDAINADAAPDTKPDSDEKKTAQSDAKESADPAGEEAEKPKPK
RTRKPRVKKADVEAEATADAAATGDNAAADTPEEAPKPKRTRKPRAKKSDIAADAAATDE
ATPEPAPVAEPTPAAEPAAQQAIEPVVEQEAETAVMKEPVAPPAPEPEPQEDKPKRKGWW
SLGR
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttattgacgccacccacgcggaagagacccgcgttgtggtggtt
gacggaaacaaggtcgaggaattcgatttcgaatccgagaataaacgccagcttgctggc
aatatctacctcgccaaggtaacgcgggtcgaaccgtcgcttcaggcggcgtttgtcgac
tatggcggaaatcgtcacgggttcctcgcgttctcggaaattcaccccgattattaccaa
atccccgtcgccgaccgcgaggcgctgatggaggaagaacgcgcctatgccgaggcgatg
aagtctgacgacgaagacaacaaacccaagcgccggtcgcgcggtgggcgagggcgttcc
aaaactgactccaaagcggagaaaacccagagcgacgacgcggtgcagactgccgaagtg
gccgaggacgcgatttctgggatggagacgattgaccttggcgatagcgaagagggcagc
tcgcccatggagcgggttgccgagacgccggtcgaagagcctgaagcagacgcggcaact
gccgaaacgcctgatgcgaccggtggcgatgatcatgccgacgcaaaccaagacggcgtc
gaggatgacgccgaaggtgatgctgacggtgacagtgacggtgacaaagacagcaaaacc
cgcgcgtcgcgcaaggattccagcatcgaggttgtcgccgacgaagacgatcaagacgac
atccgcccgccgcgcaagccgcgtcccaaacgctataagattcaagaagtcatcaaggtg
cgccagatcctgctggtgcaggtcgtcaaggaagagcgcggaaacaaaggcgctgccctg
accacgtatctgtcgctggccggtcgttactgtgtgttgatgccgaacacggcgcgcggg
ggtggtatcagccgcaaaattacgaacgcgccggaccgcaagaagctgaaagagatcgcc
aacgagatcgacgtgccacagggcgcgggtctgatcgtgcgcacggcgggtgccaagcgg
accaaatccgaaatcaaacgcgactatgagtatctgcaacgtctgtgggagcaaattcgc
gaactgacgctgaaatccatcgcgccggccaagatctatgaagagggcgacctgatcaaa
cgctcgattcgcgatctctataatcgcgagatcgacgaggttctggtcgaaggcgaacgc
ggctaccgcatcgccaaagactttatgaagatgatcatgccgtcccacgccaagaacgtg
cgccattacgcggatacgatgccgctctttgcgcgctttcaggtggaatcctatctgaat
tcgatgttcaacccgacggttcagctgaaatcgggtggttatatcgtgatcggcgtgacc
gaggcgctggtcgccatcgacgtcaactctggtcgggccaccaaggaaggctcgatcgag
gataccgcgaccaagaccaaccttgaggccgccgaagaggtggcgcgtcagttgcgtctg
cgcgatctggcgggtctgattgtcatcgactttatcgacatggacgagcgcaagaacaac
gccgccgtcgaaaagcggatgaaagacaagctgaagaccgaccgggcgcgtattcaggtc
agccgcatctcgggctttggcttgatggagatgagccgccagcgtctgcgccccggcatg
atcgaggcgacgacgcagccgtgcccatcgtgccacggcaccggattgatccggtcagac
gacaatctggcgctgagtattttgcgtcagatcgaggaagaaggcgtacgtcgccgctcg
cgcgaagtgctggtgcgtgcaccggtggggatcgcaaacttcctgatgaaccaaaagcgc
gaacatgtcgcgcaaattgaggcgcgctatggtctgtcggtgcggatcgagggcgatccg
agcctgatcagccctgatttcacgttggagaagttcaagaccgccacccgcgccgtgccc
gaagtcactgcaccggtggtatcggtggacagttctttgatggccgatattgatgagagc
ggaacgcaggacgccgatccggacgaggcgccaagggccgacaccgatacggagggcggt
gacgacaagccgaaaaagcgccgtcgtcggcgtcgcagccgtagccgcggtggcaagaat
cgcaacgatgacgagaatggtggcgataacgagaatggcaacgacggcaatgatgacgca
atcaacgccgatgccgcgccagacaccaagccggattctgatgagaagaagactgcgcaa
tccgacgccaaagaatcggcggaccctgctggtgaagaggccgagaagcccaaaccgaag
cgcacgcgtaaaccgcgcgtcaagaaggctgatgtagaggcagaagcgacggctgacgcg
gctgcaacgggtgacaatgctgctgccgatacgccggaagaagcgcccaaaccaaagcgc
acccgcaaaccgcgagccaagaagtcagacatcgccgccgatgctgcggctactgacgaa
gctacgcctgaacctgcgccggtggcagagcccacaccggcagcggaacctgcggcgcag
caggctattgagccggttgttgaacaagaggccgaaaccgccgtgatgaaagagcctgtg
gcacctcctgcaccagagcctgaaccgcaggaagacaaacccaagcgcaagggatggtgg
tcactgggccgctga
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