Roseovarius pelagicus: N7U68_01795
Help
Entry
N7U68_01795 CDS
T09340
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpel
Roseovarius pelagicus
Pathway
rpel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N7U68_01795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpel03019
]
N7U68_01795
Enzymes [BR:
rpel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N7U68_01795
Messenger RNA biogenesis [BR:
rpel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N7U68_01795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
ERCC3_RAD25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
UXX83440
UniProt:
A0ABY6DBF8
LinkDB
All DBs
Position
139810..141153
Genome browser
AA seq
447 aa
AA seq
DB search
MNLFEEMGLPGSLVKKLAAQGITDPTPIQSHAIPHALNGFDVMGLAQTGTGKTAAFGLPL
IARMMEERTKPGPKAVASLILAPTRELAGQIKDTLLPLVRDTPMKIGVVVGGQSINVQIK
RLEKGTHILVATPGRLLDLLDRRAVRLDETKFLVLDEADQMLDLGFIHALRKIAGLIPSE
RQTMLFSATMPKQMEEIAGSYLKHPKRVQVAPPGKAADKVTQEVHFIAKAEKPNLLIELL
GKHRDELALVFGRTKHGSDKLAKKLMSAGFDVAAIHGNKSQGQRDRALKAFRDGEVKVLV
ATDVAARGLDIPDVKHVYNFDLPNVPDNYVHRIGRTARAGKDGAAIAFCSPDEMGELKDI
QKTMGISIPVASGRAWEDLPDPKAKPKGRGGSGGPGGRRRGGGGGGPKGGGQGGRNAQGA
AGGGAAGQGKPQQRRRRRGGGGPKAAA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgaacttgtttgaagaaatggggctgcccggcagtctggtcaaaaaacttgccgcgcaa
ggtatcaccgaccccactccgatccagagccatgcgattccgcatgccttgaacggattt
gacgtgatggggctggcgcagaccggcacgggcaaaaccgccgcgtttggtctgccgctg
atcgcgcggatgatggaggaacggacgaagccggggcccaaagcggttgccagcctgatt
ctggccccgacacgcgaattggctggccagatcaaggatacgctattgccgctggtccgt
gacacgccgatgaaaatcggtgtcgttgttggcggacaatcgatcaatgtgcagatcaag
cggctggagaagggcacgcatattctggtggcgacgccgggccggttgctggacctgctg
gatcgtcgcgccgtgcggctggacgagaccaagttcctggtgctggacgaggccgatcag
atgctggatctcgggttcatccacgccctgcgcaagattgcgggtctgatcccgtcggaa
cgccagacgatgctgttttcggccacaatgcccaagcagatggaagaaattgcgggaagt
tatctgaagcatcccaaacgggtacaagttgcccctccgggcaaggctgcggataaggtc
acgcaagaagtccattttatcgccaaggcggaaaagccgaacctgctgatcgagttgctg
ggcaagcaccgggatgaattggcgctggtttttggccggaccaagcatggatcggacaag
ctggcgaaaaagctgatgtcagccgggttcgatgttgccgccattcatggcaacaaaagt
cagggccaacgtgatcgcgcgttaaaggcgttccgtgacggtgaggtaaaggtactggtg
gccaccgatgtggcggcgcgcggcctcgatatcccggatgtgaaacatgtctacaacttt
gacctgccgaacgtgccggacaactacgttcaccgtattggtcggaccgcgcgggccggc
aaggatggggcggcgatcgcgttctgttcacctgacgaaatgggcgaactgaaggacatt
caaaaaacgatgggtatatcgatccctgttgcgtcggggcgcgcatgggaagatttgcct
gatcccaaagccaagccaaaagggcgcggtggctctggaggtcccggtggtcgacgtcgt
ggcggcggtggcggcggccccaaagggggcggccagggtggtcgtaatgcgcagggcgca
gccggtggaggcgctgccgggcagggcaagccgcaacagcggcgtcgccgtcgcggtggt
ggcggtcccaaggctgctgcctga
DBGET
integrated database retrieval system
