Roseovarius pelagicus: N7U68_15485
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Entry
N7U68_15485 CDS
T09340
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpel
Roseovarius pelagicus
Brite
KEGG Orthology (KO) [BR:
rpel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpel03032
]
N7U68_15485 (topA)
03400 DNA repair and recombination proteins [BR:
rpel03400
]
N7U68_15485 (topA)
Enzymes [BR:
rpel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
N7U68_15485 (topA)
DNA replication proteins [BR:
rpel03032
]
Prokaryotic type
DNA Topoisomerases
N7U68_15485 (topA)
DNA repair and recombination proteins [BR:
rpel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
N7U68_15485 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
UXX82484
LinkDB
All DBs
Position
complement(2911058..2913739)
Genome browser
AA seq
893 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGKDYIVLASYGHVRDLPPKDGSVDTENGFDMKWEVGYDSRK
HVKAIADALKDDNALILATDPDREGEAISWHLEEALRKRKAIKKDTPVSRVVFNAITKSA
VTQAMENPRQVDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVE
REMEIEAFDAREYWSVKALLSTPRGQEYEARLTTLAGKKLEKFDLENATQAELAVQAVTS
RALKVVNVEAKPGSRNPSAPFMTSTLQQEASRKFGMGARQTMSAAQRLYEAGYITYMRTD
GIDMAPEAVHAVRDAITDRYGKEYVPGSPRMYKNKAKNAQEAHECIRPTEMTKDAAALKI
TDKDQFRLYDLIWKRTLACQMEAARLERTTVEIGSDDGQIGLRATGQVVLFDGFLRVYEE
GRDEPADDEDGRLPQIAQGEPAAFADGSLRAQFAKADKSDSVIDETAKGGMSAHAAAVLS
ENEAVLASQSFTQPPPRYTEATLVKRMEELGIGRPSTYASIVTTIQDREYVRKDGNRLIP
EDKGRIVTIFLLNFFRKYVGYEFTANLEEELDHVSAGEADYKELLGRFWRDFSAAIGETS
ELRITEVLDVLDDALAPTLYPPREDGSDPRTCPLCGKGQLHLKTSKSGGFVGCGNYPECR
YTRPIGGDAAEGGDRVLGEDAGDEISLRSGRFGPYVQRGEATEEIKKPPRASLPKGWTTD
DMDLEKALTLLSLPRKVGPHPDDGEMIEAGIGRYGPFVKHGRLYANLKEVDEVFTIGMNR
AVEVLAQKLASRGAGRAAAKPLKELGEHPENGGPINVMDGRYGPYVKWEKVNATLPKGTE
PDDVTMDMAVELITAKAAKSGKGRKAPAKKKAPAKKATAKKKPAAKKAPATKE
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgttgtcgtcgaatctccggccaaggccaagacaatcaacaaatatctgggc
aaggattacatcgttctggcgtcctacgggcatgtccgcgacctgccgcccaaggacggt
tcagtcgacaccgagaacggtttcgacatgaaatgggaagtcggatacgacagccgcaaa
catgtcaaagcgatcgccgatgccttgaaagacgacaacgcgctgatccttgcgactgac
cccgaccgcgaaggcgaggccatcagttggcacctcgaagaggcgctgcgtaaacgcaag
gcgatcaagaaagatacaccggtgagccgtgtggtgttcaacgcaatcacaaaatccgcc
gtcacgcaagcgatggaaaacccccgtcaggtcgacgcgccgctcgtcgaggcctatctg
gcgcgccgcgcactggattatcttgtcggtttcaatctcagcccggtactatggcgcaag
ctgcccggcgccaagtcggcgggccgtgtacaatcagtctgcctgcgtctgatcgtcgag
cgcgagatggagatcgaagcattcgatgcccgtgaatattggtcggtcaaggccctgctc
agcacaccacgcggacaagagtacgaggcgcgactgaccacccttgccggaaaaaagctg
gaaaaattcgatctcgagaatgccacccaagccgaactggcagtacaggcggttaccagc
cgcgcgctgaaggtcgtgaatgtcgaggccaaaccgggtagtcgcaacccatcagccccc
tttatgacgtccaccctgcaacaggaggccagccgcaaattcgggatgggcgcgcgccag
acgatgagcgctgcacaacggctctatgaagcaggctacatcacgtatatgcgaaccgat
gggatcgacatggcccccgaagcggtgcatgcggtgcgcgatgcaatcaccgacaggtac
ggcaaggaatacgtgccgggcagcccgcgcatgtacaaaaacaaggcgaaaaacgcgcaa
gaagcccacgaatgtatccgcccgaccgagatgaccaaggatgcggcagcgctcaagatc
accgacaaagatcaatttcgcctctatgatttgatctggaaacgcacccttgcctgtcag
atggaggctgcccgactggagcgcaccactgtcgagatcggcagcgatgatggccagatc
ggcttgcgcgccaccgggcaggtcgttctgtttgacggcttcttgcgcgtctatgaggaa
ggccgcgacgagcccgcagatgatgaggatggtcgcctgccacaaatcgcgcagggcgaa
cctgccgcttttgccgatgggtcattgcgcgcgcaatttgccaaggccgacaaatcagac
agcgtgatagacgagaccgcaaagggtggtatgtccgctcacgccgctgccgttctcagc
gaaaacgaggcggtgctggcgtcgcaatccttcacccaaccgccgccgcgctacaccgaa
gcgactttggtgaaacgaatggaagagctgggcattggtcgtccatcgacctacgccagc
atcgtgaccacgattcaggaccgcgaatatgtccgcaaggacggcaatcgcctgatcccc
gaagataagggacggatcgtcacgatattcctgctcaacttcttccgcaaatatgtcggt
tacgagtttaccgccaaccttgaggaagaactggatcacgtcagtgcgggcgaagccgac
tataaggaactgctggggcggttctggcgtgatttctctgccgccattggtgaaacatcc
gagttgcgcattaccgaggttctcgacgtgctggacgatgcactggcgccgacgctgtat
ccgccccgcgaggacggcagcgatcctcgtacctgcccgctatgcggcaagggacagttg
cacctgaaaacgtccaaatccggcggctttgtcggttgcggcaattatcccgaatgtcgc
tatacccggcccatcggcggtgatgctgcagagggcggcgatcgtgtgctgggcgaagat
gctggcgatgagatcagtctgcgcagtggccgctttggcccctatgtccagcgtggcgaa
gccaccgaagaaatcaagaagccaccgcgcgcctcgctacccaagggctggacgaccgac
gatatggatctggaaaaggcgctgacgttgctcagcctgccgcgtaaggtcgggccgcac
cctgatgatggtgaaatgatcgaggcgggcatcgggcgctatggcccgttcgtgaaacat
gggcgactctatgcgaacctcaaggaggtcgatgaagtctttaccatcggcatgaaccgc
gcggtcgaggtgctggcacaaaaactggccagccgcggcgcgggacgtgcggccgccaaa
ccgctcaaggagttgggcgaacaccccgagaacggcggccctatcaatgtaatggacggg
cgctatggtccgtatgtgaagtgggaaaaagtcaacgccaccctgcccaaaggcacagag
ccggacgatgtcaccatggacatggccgtggagttgatcaccgccaaggccgcgaaatcc
ggcaagggtcgcaaggcgccagccaagaagaaggcacctgcaaagaaagcgacggcgaag
aagaaacccgcagccaagaaggcacctgcgaccaaagaatag
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