Ralstonia pickettii 12D: Rpic12D_0207
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Entry
Rpic12D_0207 CDS
T00925
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03420
Nucleotide excision repair
rpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rpic12D_0207
03430 Mismatch repair
Rpic12D_0207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpf03400
]
Rpic12D_0207
Enzymes [BR:
rpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpic12D_0207
DNA repair and recombination proteins [BR:
rpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpic12D_0207
MMR (mismatch excision repair)
Other MMR factors
Rpic12D_0207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
Cas_Cas4
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACS61516
UniProt:
C6BBA4
LinkDB
All DBs
Position
1:complement(218003..220915)
Genome browser
AA seq
970 aa
AA seq
DB search
MPILTEINSLVESEGLTRPQASAVVDDASAILCIACAGSGKSQTLAYRIARLMHQGVPPN
TIVAITFTEKAADSIKRRIADVLVRTGQSPNLIGQMFIGTIHAFCQNVLADADAIFRQYD
VLDGNRFMLYLISRYYDLGISDLRPRFKDRYFETLENVRNAWNIYRDEGLSIAEIDASDA
QLGKTLRSIQDGLARDQFIDFASMVREVADRSQSAGRVRERLASIRHLLIDEYQDVSGAQ
EELVAAVHSLGGSIFVVGDDDQSIYGWRGAHVANILEFEDRYPNVSRHVLDINFRSTRAI
VETSNAFAAAQLGPQRLPKQPEAYADQGPRQLLVHHFPTRAEEAEWVADRIATLIGAEYK
KRPDDPGRGLTPADFAILMRSTKSPEQDGSPRHAAFSDALAMRGIDFTLSAGGSVFDRPA
VQALREVFSALEQGTIDRNLADALVTEHIRPAYPHVNVRETYNVLAEWGRRIHQPAGSAR
QRLFPQDLLFDLLEAFGLAKSDFDEDVMRDIGLFSRMLQDVESVYLSVDSTNRFRAVVRF
LQQVADKGYDVSTKDSVSRPNAVTISTVHQVKGLEFPVVFVVDVVPGRFPGKQSSFDSLL
PANLMASAIAHGAYTNNVFAEARLFYTAMTRAERFLHVTGAALLPNGKRSNRQSTFAAAL
KDIELCTDPTRLPEDLNRAPQERDAEEATLPTSFSDVKYYLNCPKNYQFRKSYGFSPRVP
ELFGYGTVVHVAIEKLHEMFRDRAPTPDEAQAVAEQNFHLKHVAPSRDPETRPGAYEQAK
EKARKIAGEYVQQYGTDFVQQRQVEVRFEIPARGCLITGAIDLLMKCDDVGEIVEAHVLD
FKTMEGGKDPLANAKLDWRELSLQVQLYAKAAREVYSENAATGSIHLLKDNRRIEIPIDP
ESVNAAIKNVEWAVQGILDQDFPMRPSTQKCEACDFHRLCPKQKQDFHPGMGKPPKINTP
AGPQLTSALE
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgccaatactcacagaaattaacagtctggttgagtccgaaggattgacacgcccacaa
gccagcgccgtcgtcgacgacgcaagtgcgattctctgtatcgcctgcgcgggatcagga
aaatctcaaacactggcctatcgcatcgccaggttaatgcaccaaggcgtgccccccaac
acaatcgtcgccatcacgttcaccgagaaagcggctgactccatcaaacgtcgaatagct
gacgttttagttcgaaccggccaaagccccaacctaatagggcagatgtttatcggaact
atccacgcgttctgccagaacgtgctggcggacgccgacgcaatctttcgccagtacgac
gtgctcgatgggaaccgattcatgctgtacctcatttctaggtactatgacctcggcata
tcggacctccgtccaaggttcaaggatcggtacttcgaaacgctcgaaaacgtccgaaat
gcgtggaacatctaccgcgacgaaggcctttccattgccgaaatcgatgccagcgacgcg
cagttggggaaaacacttcggtctatccaagacggccttgctcgtgaccagttcattgac
tttgcgtcgatggtccgtgaagtggcagaccgttcgcaatcggcgggaagggtgcgcgaa
cgtctcgcatctattcggcatctcctgatcgacgagtatcaagacgtatccggtgcgcag
gaagaacttgtcgctgctgttcacagtttagggggaagcattttcgtcgtaggcgacgat
gatcaatcgatctacggttggcgtggcgcccatgtggccaatatcctcgaattcgaggac
cgctacccgaacgtgagccgacacgttctagacatcaacttccgcagcacgcgcgccatt
gtggagacttccaatgcgttcgcggcagctcagcttggcccgcagcgactgccaaagcaa
ccggaagcctatgcagaccagggaccgcgacaactactggtccaccacttcccaacacga
gcggaggaagccgagtgggtcgcagaccgtatcgctaccctcatcggagcggaatacaag
aagaggccggatgaccccggacgcggcttgactccggcggatttcgcaatccttatgcga
tccacaaaatcgcctgagcaggacggcagtcctcgacacgcggcgttttccgatgctctt
gccatgcgcggcatcgacttcacgttaagcgccggcggaagtgtctttgatcgaccggct
gtacaggcgttgcgagaggttttttccgcgctagagcaaggaaccatcgatcggaatttg
gccgatgccttggtcacagagcacattcgccccgcttatccgcatgtaaacgtaagggag
acctacaacgtcctggcggagtgggggcgacgtattcaccagccagctggctctgcgcga
caacggctgttcccgcaggatctcctattcgatctactcgaagcatttggcttggcgaaa
tccgacttcgatgaagacgtcatgagggacatcgggctgttcagccgtatgctgcaggat
gtcgaatccgtctacctcagcgtagattcgacgaaccgcttccgcgccgtagtgcgattc
cttcaacaagttgccgacaagggttatgacgtcagcacaaaggattcagtgtcacgcccg
aacgcggtaaccatctccactgtccaccaagtgaaagggctggagtttccagtggtgttt
gtcgtggacgttgtacctggacgcttccccggcaaacaatcgagttttgactcactgctg
cctgccaatctcatggcgtcagcaattgcccacggcgcctataccaacaatgtctttgca
gaagcacgcctgttctatacagcaatgacgcgggcggagcggttcctgcatgtcacaggc
gcggcgctactgccaaatggaaagcgctccaaccggcaatccacatttgctgccgcgctg
aaagatatcgagctttgcacagacccgacgcgcttgccggaagacctgaaccgagcgccc
caggagagagatgccgaagaagctacgctgcccacttcgttctctgacgttaagtactat
ctaaactgccccaagaactatcagtttcgaaagagttatggattcagtccacgagtccct
gaacttttcggctatggcaccgttgtccacgtcgccatcgaaaagctccatgagatgttt
cgcgacagagcgccgactcctgatgaggcacaagccgtcgcggagcagaacttccatttg
aagcatgttgctcctagccgtgaccccgaaactcgccccggtgcctatgagcaagccaag
gagaaggctcgcaaaatcgctggtgagtacgtacagcagtatgggaccgatttcgttcaa
caacggcaggtagaagttaggttcgaaatcccagctcgcggatgcctgattacaggcgct
atagacctgcttatgaaatgcgacgatgtcggcgaaatcgtcgaggcacacgttctggac
ttcaagacaatggagggcggaaaagatcccttagcgaacgcgaagcttgattggagagaa
ttgtctcttcaggtacagctctacgctaaggcggcgcgagaggtctacagtgagaacgca
gcgaccggttccatacacttgctgaaggacaatcgccgcattgaaatcccgattgatccg
gaatcggtcaatgctgcgatcaagaacgtcgaatgggcggtgcaaggcatcttggatcaa
gacttcccaatgcgcccatcaacacagaaatgcgaagcgtgtgacttccatagactctgc
cctaaacagaaacaagacttccatcctggcatgggcaaacctccaaaaatcaatactccg
gctggtccgcaactgacctctgctctggagtaa
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