Ralstonia pickettii 12D: Rpic12D_1045
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Entry
Rpic12D_1045 CDS
T00925
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03420
Nucleotide excision repair
rpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rpic12D_1045
03430 Mismatch repair
Rpic12D_1045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpf03400
]
Rpic12D_1045
Enzymes [BR:
rpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpic12D_1045
DNA repair and recombination proteins [BR:
rpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpic12D_1045
MMR (mismatch excision repair)
Other MMR factors
Rpic12D_1045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACS62337
UniProt:
C6BG38
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All DBs
Position
1:complement(1096679..1098442)
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AA seq
587 aa
AA seq
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MNIFLPTSEQQAIITTTALRVLVSAVAGSGKTRTLCARAGRLTDDGVPLSDILVLTFSNN
AVNVLKERLPARILVKTFHAFALSVVKQATGSVKLKPQMLPLARRAELFSGALCTYPKTC
SLVRRRTGVSLNTKGERKRLLEFFDRCNGSDDVAARLVQDAGSGFACYAGMLAELRKIRR
AYDKRMERAGAIDFSTMLTRAIPLCDTASLPFKHLLVDEAQDMTDDQMRLLAGLARRIPN
VMVFGDPRQAIYGFLGGHAGNLRDALRDAVTMPLSRSFRLTAQNAALANAILGGDNPVVG
TRHGVTPSLHRCASAIVQEDAVVDLVRKLKSQGVTGNQIAVLARTKAQTRLVEKALLAAG
HEIHPVHLPREPEHADRLLDMLTLALTCIATAKAGNKPNRKWRARRLAEIVGKPIPANRL
APCLLMLKKAAPVPSFQGCYTVAMRIYLRLMREPGKPVTNIAAELGRWQPIASKFKTVQA
LRSHIETLRAQAPVVLSSIHAAKGGEWDHVIVLGVTDGSIPFYRATDSNQIAEERRLFYV
AVTRARKRLHLFHAPFHHAPSRQAFTERSRLLTPAVMASLQQAEQPG
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaatattttcctacccacctccgagcaacaggcgatcatcaccacgaccgcgctgcgc
gttctcgtgtccgctgtcgccggcagcggcaagactcggaccctgtgcgcgcgagctggt
cgtctgaccgatgacggcgtgcccctctccgacatcctggtgctcaccttctcgaacaac
gcggtcaacgtgctgaaggaacgcctgcccgcccgcatcctggtgaaaacctttcacgcg
ttcgccttgagcgtcgtgaagcaagctactggctcggtcaaactcaagccacagatgctg
cccctggcccgcagggctgagttgttctcgggcgccttgtgcacctacccgaagacctgc
agcttggttcgccgaaggaccggcgtttcgctgaacaccaagggcgagcggaaacggctg
ttggagttcttcgatcggtgcaacggcagcgatgatgtagccgcgcgtctggtgcaggat
gctgggtctgggttcgcctgctacgccggtatgttggccgaactgcgtaaaatccgccgc
gcgtacgacaagcgcatggagcgagccggcgccattgacttctcgaccatgctgacgcgc
gcaattcccctttgcgataccgcatcactgccgttcaagcacctgctggttgacgaagcg
caggatatgaccgatgaccagatgcggcttcttgctggccttgctcgtcgcatccccaac
gtgatggtgttcggtgacccgcgacaggccatctacggcttcctaggtggccacgctggc
aacttgcgcgatgcgctccgtgacgccgtgacaatgccgctctcgcggtcgttccgtttg
actgcgcagaacgccgcgctggcgaacgctatcctgggcggtgacaaccccgttgttggt
actcgtcacggtgtcacaccgtcactgcaccgttgcgcctccgctatcgtgcaggaagac
gcggttgttgatctggtccgcaagctcaagagccaaggcgtgacgggtaaccaaatcgcc
gtgttggcgcgaactaaagcacagacccggctggtcgaaaaagcgctgttggccgctggt
cacgagatccatccggtgcatctgccgcgcgaacccgagcacgccgaccggctgctcgat
atgctaacgctggcgctgacctgcatcgccacggcgaaggcgggcaacaagccgaatagg
aagtggcgtgcccgccggctggcggagatcgttggcaaaccgatcccggcaaatcgactg
gcaccctgtctcctcatgctcaagaaagctgcccccgtgccctccttccagggatgctat
acggtggccatgcgaatctacctgcgcctgatgcgggagccgggcaagcccgtcaccaac
atcgccgccgaactcggtcgctggcaacccatcgccagcaagttcaagacggtgcaggcg
ctgcggtcgcatatcgagacgctgcgcgcacaggcaccagtggtcttgtcctcgatccat
gccgcaaagggcggtgagtgggaccacgtcatcgtgctgggcgtcacggatggttccatc
ccgttctatcgagcaaccgactcgaaccagatcgcagaggaacgccgcctcttctacgtg
gccgtgacgcgagcccgcaagcgactccacctgttccatgcgcccttccatcacgcgccg
tcgcggcaggcattcacggagcgctctcgcctcctgactcccgccgtcatggcgtcgttg
caacaggcggaacaacccggctag
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