Ralstonia pickettii 12D: Rpic12D_1896
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Entry
Rpic12D_1896 CDS
T00925
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpic12D_1896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpf03019
]
Rpic12D_1896
03016 Transfer RNA biogenesis [BR:
rpf03016
]
Rpic12D_1896
Enzymes [BR:
rpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Rpic12D_1896
Messenger RNA biogenesis [BR:
rpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Rpic12D_1896
Transfer RNA biogenesis [BR:
rpf03016
]
Prokaryotic type
tRNA degradation factors
Rpic12D_1896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
KH_NusA_2nd
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ACS63177
UniProt:
C6BJQ4
LinkDB
All DBs
Position
1:complement(2012457..2014631)
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AA seq
724 aa
AA seq
DB search
MTMFNKVVKEFQWGGHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFP
LTVDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SMNPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLV
VAGTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHELVRDGGKPEWDWQAAPK
NEALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYKSVATKLAEAGVEADGVEVDNILF
ELESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGT
KSDEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREVGHGRLAKRALIPVLPKD
DEFAYTIRLVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGVAMGLILEDNKFAVL
TDILGDEDHLGDMDFKVAGTDAGITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMR
AAMGGARTELSEHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIA
STSSEGMAEAKRRIEGITAEAEVGKIYNGTVLKLLDFGAIVNILPGKDGLLHISEIANER
VNQVSDYVKEGQAVRVKLLSTDEKGRMRLSIKAAKAEEGDVPAAAPQAPGAGDAASQQQQ
QQQQ
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgttcaataaggtcgtcaaagaattccaatggggcggccataaggtccgcatg
gagacgggtgagatcgcccgtcaggcgagcggcgctgtgctgctcgatatggacgacacc
gtcgtgctcgccaccgtggtgggcgccaagaacccgaagccgggtcaggacttcttcccg
ctgactgtcgattacctcgagaagacctacgccgccggcaagatcccgggtggcttcttc
aagcgcgaaggccgtccgtcggaaaacgaaacgctgacctcgcgcctgatcgatcgcccg
ctgcgtccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtgctg
tcgatgaacccggaagtgccggctgacattccggcgctggtggcggcttcggctgcgctg
gctgtgtcgggtctgccgttcaacggcccggtgggcgctgcccgcgtgggttacaaggat
ggccaatacctgctgaacccgaatcgtgcgcaactcgcgcactcggatctggacctggtt
gtggccggtaccgagcgtgctgtgctgatggtcgaatccgaagcgcagcagctgtcggaa
gaagtcatgctaggcgccgtggtgtacggccacgagcagatgcagatcgccatcaacgcg
atccacgaactggtgcgcgacggcggtaagcccgagtgggattggcaagctgctccgaag
aacgaagcgctggtcgccaaggtgtccgagctgggcctggccgatctgcaagccgcttac
caactgcgccagaagtcggcccgcagccagaagctgaaggaagtctacaagtcggttgcg
accaagctggccgaagccggtgtggaagccgacggcgtggaagtcgacaacatcctgttc
gaactcgaatcgaagatcgtgcgcggtcagatcctgaacggcgaaccgcgtatcgacggc
cgcgacacccgcacggtgcgcccgatcgagatccgttcgtcggtgctgccgcgtgcccac
ggctcggctctgttcacgcgcggtgaaacgcaagcgctggtggtggccacgctcggcacc
aagagcgacgagcagatcatcgacgcgctgcaaggcgagtaccgtgatcgcttcatgctc
cactacaacatgccgccgttcgccacgggcgaaaccggtcgcgtgggcagcccgaagcgc
cgcgaagtcggccacggccgtctggccaagcgcgcactgattccggtgctgccgaaggac
gacgaattcgcttacacgatccgtctggtgtcggaaatcaccgagtcgaacggctcgtcg
tcgatggcttcggtgtgcggcggttcgctggcactgatggatgctggcgtgcccctcaag
gcgcacgtggccggcgtggccatgggcctgatcctcgaagacaacaagttcgccgtgctg
accgacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtcgcgggtacc
gacgcaggtatcaccgcgctgcagatggacatcaaggtgcagggcatcaccaaggaaatc
atgcaggtggcgctggcgcaagccaaggaaggccgtctgcacatcctgggcaagatgcgg
gccgccatgggcggcgctcgcaccgagctgtcggagcacgctccgcgcatgatcaccgtc
aagatcaatccggagaagatccgcgacgtgatcggcaagggcggttcgaccatccaggcg
ctgaccaaggaaaccggctgcacgatcgacatccaggaagacggcacgatcaccatcgcg
tcgacttcgtcggaaggcatggccgaagccaagcgtcgcatcgaaggcatcacggccgag
gccgaagtgggcaagatctacaacggtacggttctgaagctgctggacttcggcgcgatc
gtgaacatcctgccgggcaaggacggtctgctgcacatctcggaaatcgccaacgagcgc
gtgaaccaggtttccgactatgtgaaggaaggccaggccgtgcgcgtgaagctgctgagc
accgacgagaagggccgcatgcgtctgtcgatcaaggctgccaaggctgaagaaggcgac
gtgcctgccgctgcaccgcaagccccgggtgctggcgacgctgcctcgcagcaacaacag
caacaacagcagtaa
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