Ralstonia pickettii 12D: Rpic12D_3362
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Entry
Rpic12D_3362 CDS
T00925
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf00061
Fatty acid biosynthesis
rpf00071
Fatty acid degradation
rpf01100
Metabolic pathways
rpf01212
Fatty acid metabolism
rpf02024
Quorum sensing
rpf04146
Peroxisome
Module
rpf_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rpic12D_3362
00071 Fatty acid degradation
Rpic12D_3362
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rpic12D_3362
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rpic12D_3362
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rpf01004
]
Rpic12D_3362
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rpf04147
]
Rpic12D_3362
Enzymes [BR:
rpf01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rpic12D_3362
Lipid biosynthesis proteins [BR:
rpf01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rpic12D_3362
Exosome [BR:
rpf04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rpic12D_3362
Exosomal proteins of breast cancer cells
Rpic12D_3362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ACS64626
UniProt:
C6BI30
LinkDB
All DBs
Position
1:3549307..3550995
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AA seq
562 aa
AA seq
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MTIQNREPVNYLAGEMPLHRYCAHHAQQTPERIALLWYGRTICWRELDQASTRLAVQLRR
LGVTRGDRVALFLHNCPQAIVAHLATAKLGGIVVPCGPLSRQHELRDQLADSGAKILVAA
ADLMPIVEAARLGTSVTTVITTRYADLQPSQPACRKALAVPPELIAADASSAPPLKNKPG
AAQLDLMQLMAEPVDVAERNAVAAIEVSLDDVALMVYTSGTTGRPKGAMLTHRNALYKTA
VTVQVSGIHAADVMLAVAPLSHIAGMLMGMNVMLYSGATTILLHRFDPLAVLQAIDRYRV
TRWYSMTPMNLAVMAHPDAAQYRMESLVANPCTSFGVTLTEAIAEQWRAFAGPQCRIYEA
AYGLSETHTCDAITPAEAPRWGWHGKIVPQTEVCIVDPHTGAELTPGQAGEITIRSPGVF
RGYWQRDDATRAVLHNGFLRTGDIGQVSPDGYLQWQGRIKEMIKVSGYSVFPEEVEALLS
RHPGIRQVAVTPIPDPDKGEVVCAHVVPMNGVTLSEAELIAWSRDNMAPYKVPRRVKFHD
ALPATATGKVLRRLLREEAVAA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccagaaccgcgaaccggtcaattatttggcgggcgaaatgccgctgcaccgg
tattgcgcccaccatgcgcagcaaacgcccgagcgcatcgccctgttgtggtacggccgc
acgatctgctggcgcgagctggaccaagcctcgacgcggctggcagtgcagttgcggcgc
ctgggcgtgacacgcggcgatcgcgttgcgctgtttctgcacaattgtccgcaagccatc
gtggcgcatctggccacggccaagctgggcggcatcgttgtgccgtgcgggccgctgtcg
cgccaacacgagctgcgcgaccaactggccgattctggcgccaagattctggtggccgcg
gcagacctgatgccgatcgtcgaggccgcccgacttggcacgtcggtcacgaccgtcatt
actacgcgctatgccgatctgcagccctcgcagccggcgtgtcgtaaggcgctggccgtg
ccgcccgagctgattgccgccgatgcctcgtccgcgccgccactcaagaacaagccgggc
gccgcgcagcttgacctgatgcagctgatggccgaaccggtggatgtggccgagcgcaac
gcggtggcggctatcgaggtgagcctggacgacgttgcgctgatggtctacacgtcgggc
accaccggccgcccgaagggcgccatgctcacgcaccgcaacgcactgtacaagaccgcc
gtcacggtgcaggtcagcggcatccatgccgcggacgtgatgctggcggtggcgccgctg
tctcacatcgccggcatgctgatgggcatgaacgtgatgctgtactccggtgcgacgacc
atcctgctccatcggttcgatcctctggccgtgctgcaggcgatcgaccgctaccgcgtg
acacgctggtacagcatgacgccgatgaatctggcggtcatggcgcatccggacgcggcg
cagtaccgcatggaatccttggtggccaacccatgcaccagcttcggtgtcaccctgacc
gaagcgattgccgagcagtggcgtgcttttgccggcccgcaatgccgcatctacgaagcg
gcctatgggctgtcggaaacccacacctgcgacgccatcacgcccgccgaggctccgcgc
tggggttggcacggcaagatcgtcccgcagaccgaggtatgcatcgtcgacccgcacacc
ggcgcggaattgaccccgggccaggccggcgagatcaccatccgcagccccggcgtgttc
cgcggttactggcagcgcgacgatgccacgcgtgccgtcctgcacaacggctttctgcgc
accggcgatatcggccaggtctcgcccgacggctacctgcaatggcaggggcgcatcaag
gaaatgatcaaggtgtcgggctacagcgtgttcccggaagaggtcgaggcgctgctgtcg
cgccaccccggcatccgccaagtggccgtgacgcccattcccgatcccgacaagggcgaa
gtcgtgtgcgcgcacgtggtaccgatgaacggcgtgacgctctcggaagccgagctgatt
gcatggtcgcgcgacaacatggcgccatacaaggtgccgcggcgcgtgaagttccacgat
gcgctgcccgccaccgcaacgggcaaggtgctgcgaaggttgctgcgcgaagaagccgtc
gccgcctga
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