Ralstonia pickettii 12D: Rpic12D_4798
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Entry
Rpic12D_4798 CDS
T00925
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03030
DNA replication
rpf03430
Mismatch repair
rpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rpic12D_4798
03430 Mismatch repair
Rpic12D_4798
03440 Homologous recombination
Rpic12D_4798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpf03032
]
Rpic12D_4798
03400 DNA repair and recombination proteins [BR:
rpf03400
]
Rpic12D_4798
Enzymes [BR:
rpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rpic12D_4798
DNA replication proteins [BR:
rpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rpic12D_4798
DNA repair and recombination proteins [BR:
rpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rpic12D_4798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ACS66033
UniProt:
C6BPA9
LinkDB
All DBs
Position
pRp12D01:133954..134946
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AA seq
330 aa
AA seq
DB search
MPPDSEPEAEPNPPPGEFHTDQGTAGLTTEPEALKRSPLSRTVLKALRLKPAPGQKAVQR
VWSRRRREYIELFDPALCVPMRAARTPSAAQLAALQAGRRTQTHADCAGCGRNLERVRLN
QQGICSECVSSQEAEEASSRQEERRADLRALVDAAPPGRTVYLDTETTGLSAASGDELLE
LAVIDDAGKVLFETLIRPNHLTEWPAAQVIHGITPADVAGAPSLSAVLQGLAAAIEGAEA
LVIFNADFDLGFLPEPLRPLAKQKARCAMQAFALWCGEWDDYRYSYRWQNLQQAAAIAGH
VWEGRAHRARADAFAVRTVWHWLRAAVVAG
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcccccagattccgagccagaggcggagcccaatccgccgccgggagagttccatact
gatcaggggacggcgggcctcactacagaaccggaggcacttaagagatctccgctcagc
cgcacagtgttgaaggcgttgcgcctgaagccggcgcccggacaaaaggccgtacagcgg
gtttggagccgtcggcggcgcgagtacattgaactctttgatccggccctgtgcgtcccc
atgcgggctgcacgtacaccctctgctgcccagttggcggctctgcaagcgggacgccga
acacagacgcacgctgattgcgccggctgtgggcgcaacctggaacgagtacggctaaat
caacagggcatctgcagtgagtgcgtttcctctcaggaggcggaggaagctagctcccgt
caggaggagcgtcgtgctgatctgcgcgcattggtcgatgccgcgccaccagggcgcact
gtctacttggatactgaaacgactggcctttcagcggcctcgggtgacgagctgctcgaa
ttggccgtgattgacgacgctggaaaggttctctttgagacgctgattcggccaaaccac
ctcaccgagtggccagcggcgcaggtcatccacggcatcacaccagccgatgtggccggt
gccccatccctgagtgctgtgctgcagggactggctgctgcgatcgagggcgctgaggcg
cttgtcattttcaatgcggacttcgacctgggatttctacctgagccgctacggccgttg
gcgaagcaaaaggcgcgttgcgctatgcaggccttcgcgttgtggtgcggggagtgggac
gactaccggtacagctaccgctggcagaacctgcagcaggctgcggcaattgcaggtcac
gtgtgggaggggcgggcccaccgcgcgcgagcggacgcattcgctgtgcggaccgtctgg
cattggctgcgcgcagcggtcgtcgccggctaa
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