Rickettsia philipii: RSA_03860
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Entry
RSA_03860 CDS
T01759
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rph
Rickettsia philipii
Pathway
rph03410
Base excision repair
rph03430
Mismatch repair
rph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RSA_03860
03430 Mismatch repair
RSA_03860
03440 Homologous recombination
RSA_03860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rph03400
]
RSA_03860
DNA repair and recombination proteins [BR:
rph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RSA_03860
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RSA_03860
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSA_03860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFB26326
UniProt:
H6PTX9
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All DBs
Position
679410..681173
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AA seq
587 aa
AA seq
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MKPQVSINGKIWQQKLINEDIVTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNL
LPDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVP
DRIAEGYGPTPFAMQKIKDHGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHITTEIL
PDAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLV
ALGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRI
NAGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQQDSS
VLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALNDGIGKASCRSILGIDFGAEIINAKS
KDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVNSVNF
PLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAIAF
NSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDILLKE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccacaagtatctataaacggtaaaatctggcagcagaaactgattaacgaagat
atagtcaccgagttatgtcgtagtttcaaaattagtgatttacttgctaggatagtatca
ttaagagtaaataatctagaggaagtagaaaatttcttgagaccgaaaatcaaaaattta
ttacctgatcctttccatctacttgatatggaaaaggctgtagatagaactgttacagct
attttaaataaccaaaaaatatgtatctttgccgattatgatgtagacggtgctacttca
gccgctttacttaaaaatatttttagagatttaaatatactatgtgatatttatgttcct
gatcgtatagctgaaggatacggtccaactccttttgctatgcaaaaaattaaagatcac
ggcacagaattattaattacggttgattgcggtgctatggcacatgaagccctaaaatac
gcaaaagacgttaaccttgatgttatagtaatcgatcatcatataactacggaaatatta
ccggatgcagtagctatagtaaatccaaatcgtattgatgaaaaaagcgaatataaacat
ttggcagccgtaggagttgctttcttatttgcaactgcaatattatcgaatttaaagaag
caaaattatttcacgcaaacaatgcttcagcctaatctaatgcagtatctagatttagtg
gctcttggtactgtttgcgatatgatgaaattaacaggcttaaatcgtgcatttgttgca
agcggattgaaagtaatgcaacaaaggcaaaatatagggattaaaacattatatgatatg
gcagggcttcatgaaataccaaaatgttatcatttagggtttattctaggtccgcgtatc
aatgcaggcggtagagtaggaaagtcaagtttaggggctcatctcctatctactagttgt
tctaatgaagcaaataaattagctaaagaacttgaaaaacacaataatgagcgtaaagta
attgagttattaatgatagaagaagcgatggaaattgctttgacacaacaagatagtagt
gtattatttatcgtaaaagaaggatggcatccaggcgttataggaatcgttgccggcaaa
ttaaaagaaaaatttgataagccggtggcagttatagctttaaatgacgggattggtaaa
gcttcatgccgttctattttaggtattgattttggtgctgaaattatcaatgctaaaagc
aaagatttgctaatagcaggcggaggtcatgctatggcggcaggttttaccgtaacggct
gaaaaattacaagaattgcagaatttttttaataatgcttttagaattagtataactaaa
ctagaaaattataagcatgcggaatatgatattgatttaacggttaatagtgtgaatttc
cctttaatggaggaattaaacactttagagcctttcggtcaaggaaatcatgagcctata
tttaaatttgatgatttatttgtattaaaagcggatatcgttggaagtaagcatattaaa
tgtatgcttgttccaaataagcgaggctttggtaataaagccttatctgctattgctttt
aattcggtaggcactgcatttgaagatgttttattaagccctaaagcaaaaaatattgct
gcaataggaacgttaaaaactaataattggcaagataattatactattcaattaattata
aaagatatacttctaaaagagtag
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