Rhizobium phaseoli: AMC79_CH01659
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Entry
AMC79_CH01659 CDS
T04590
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03030
DNA replication
rpha03430
Mismatch repair
rpha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMC79_CH01659 (dnaE1)
03430 Mismatch repair
AMC79_CH01659 (dnaE1)
03440 Homologous recombination
AMC79_CH01659 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpha03032
]
AMC79_CH01659 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_CH01659 (dnaE1)
Enzymes [BR:
rpha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMC79_CH01659 (dnaE1)
DNA replication proteins [BR:
rpha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMC79_CH01659 (dnaE1)
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMC79_CH01659 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
ANL97474
LinkDB
All DBs
Position
1684059..1687556
Genome browser
AA seq
1165 aa
AA seq
DB search
MADTVKGSTGEAIGGTPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNL
FVALEFSQKAMDDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYER
LVDLVSRAYLGGDSNQAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARL
LMLKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPI
LPRFTGATDDAEEAERAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGISVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQF
ETGDNRIYYALAALKGVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFGTDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLA
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSQAIKQGASNARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDMLESGKSFLLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGHLNAKGDGLVSFIVIKEEGKREVEVALP
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacggtaaagggttcgacgggtgaggcgatcggcggcacgccgggcttcatt
cacctgagggtccattccgcctattcgcttctcgaaggcgcgctgccgctgaagaagatt
ctctataaggcggccggcgacaatcagccggccatcgcgatcaccgacaccaacaatctg
ttcgtcgccctcgaattctcgcagaaggcaatggacgacgggctgcagccgatcattggc
tgccaggtctcgatcgacatggaagatgggcttgagaccgaaaaacgcggcggccagcag
gcgttggtcaagctgccgtcgatcgtccttctcgccgcaacggaggccggttacgaaagg
ctggtcgatctcgtcagccgcgcctatctcggcggcgacagcaaccaggccattcatatc
agggcctcctggctggaggaggctggcacggaagggctgatcgccttgaccggcgccctg
acagggccggtcgacgcggcgatcagggagggccataccgcccaagccgaagcgcggctg
ctgatgctgaagcgtctcttcggcgaccggctctatgtcgaactgcagcgtcatggcacc
tacgacaagcggcacgagcagaagatcgtcgggctcgcttatgcccacgacctgccgctg
gtcgccaccaacgaggctttctttccgacacgcgacgattacgacgcccatgatgcgctg
atggcggttgctcataatgccatcgtctccgacgacagccgctttcgtctgacgccggat
cattatctgaagagccgcgccgagatggccaagctcttcgccgacctgccggaagcgctg
gagaacacgatcgagatcgccaggcgctgctccttcgtgctgaagacgcggaaaccgatc
ctgccgcgcttcacgggtgcgaccgacgacgccgaggaggccgaacgcgccgaggcgggt
gaattgcgccgccaggcggtcgaagggctggacatgcggctttcgaccctcggcatgtcg
ccaggttacgaggaaaaggattatcgcgagcggctcgaattcgagctcagcgtgatcgaa
cgcatgcgctttcccggctacttcctgatcgttgccgacttcatcaaatgggccaagcag
catgacattccggttggtcccggccgtggttcgggcgccggttcgctggtcgcctatgcg
ctgacgatcaccgacgtcgatcccttgcggttttcactgctgttcgagcgcttcctcaat
ccggaacgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgttacgtccaggccaaatacggccgcgaacaggtggcccagatcatcaccttc
ggttcgctgcaggcgcgcgcagcactccgcgacgtcggccgcgtgctggaaatgccctac
ggccaggtcgacaagatctgcaaacttgtgccgaacaatccggccaatccgacgccgctc
tccaaggcgatcgaggaggagccgaagctgcaggaggaggcggcgaaggagccggtggtc
gcgcgcctgctcgatatcgcccagaagatcgaggggctttaccgccatgcctcgacccat
gccgccggtatcgtcatcggtgaccgcccgctgtccaagctggtgccgatgtatcgcgat
ccgcgctcggacatgccggtcactcagttcaacatgaaatgggtggagcaggcgggcctc
gtcaaattcgacttcctcggcctgaagacgctgaccgtgctgaaggtcgccgtcgatttc
gtcgccaagcgcggcatcagtgtcgacctggcggccattcccctggacgacaagaagacc
tacgagatgctgtcacgcggtgagacggtcggcgtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaagccggactgcatcgaggacatcatcgcgctggtggcg
ctctatcgtccgggcccgatggagaacatcccgacctacaatgcccgcaagcacggtgac
gaagagctggaatcgatccatccgatgatcgaccacctgctcaaggaaacccaaggcgtc
atcgtctatcaggaacaggtgatgcaaatcgcccaggtcctgtccggctattcgctcgga
gaagccgatcttttgcgccgcgccatgggtaagaagattaaggcggagatggaccagcag
cgcgaacgcttcgtcgatggcgccgtcaagaacggcgtatcgaagccgcaagccgacaat
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcc
tatgccatcgtctcctaccagacggcctatatgaaggcgcattatccggtggaattcctc
gccgcctcgatgacgctcgacatgtccaacacggaaaaggtcaacgacttccgccaggac
gccaagcgcctcgggatcgaggtgatcgccccgtcggtgcagacctccttccgccagttc
gagaccggcgacaaccgcatctattatgcgctcgctgctctcaagggcgtcggcgaatcc
gccgtagaccatatcgtcgaggtgcgcggcgacacgccgttcgccggcatcgaggatttc
tgcctgcgcatcgatccgcgccaggtgaaccgccgcgtactggaaagcctgatctatgcc
ggcgccttcgactgcttcggtaccgaccgcgcccagctttcagccgggctcgaccgcatc
ctcggctatgcccagcgggcgcaggaaaacaagctgagcggccagtcggatattttcggc
agcaccctgacctcggggccggagaagattgccctgccgccgttttcgccttggcttgcc
tcggagcggctgctcaaggaattccaggtgctgggattctatctcacggctcacccgctc
gattcctatagcaacatcctgcagaagatgcgggtgcagacctttgccgaattttcccaa
gcgatcaaacagggcgcgtccaatgcgcgccttgccggcaccgtcatctccaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttttcggattcgtcgggccag
ttcgaggccgtgctgttttcggaaatgctgaaccagtaccgcgacatgctcgagtccgga
aaatccttcctgctgacggcgaccggcgaggagcggccggaggggatcggtctgcgcatc
cagacgatccagtcgctggaggaaaagtcgctgcagatgcagaaggcgctgcgcgtctat
gtcagagattccgggccgctgaaaatggtcgccggccatctcaacgccaagggcgacggc
ctggtttccttcatcgtcatcaaggaagagggcaaacgcgaggtcgaagtggcgctgccg
gagaaataccgcatcaccccggagatcgccgccgctcttcgcgctgcccccggcgtcgtc
gacgtcgagctggtatga
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