Rhizobium phaseoli: AMC79_CH01711
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Entry
AMC79_CH01711 CDS
T04590
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMC79_CH01711 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpha03021
]
AMC79_CH01711 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_CH01711 (rpoC)
Enzymes [BR:
rpha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMC79_CH01711 (rpoC)
Transcription machinery [BR:
rpha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMC79_CH01711 (rpoC)
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMC79_CH01711 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ANL97518
LinkDB
All DBs
Position
1735512..1739720
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPATKAKIVADTENL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
VLRNSEGSLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAHGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggccaatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgtgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccatatctggttcctgaagtcg
cttccgtcacgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgtcctc
tatttcgaaaactacatcgtcaccgagccgggcctgaccgctctgaaggagcaccagctt
ctctcggaagaagagtacatgctagccgtcgacgaatacggcgaagaccagttcaccgcg
atgatcggcgccgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgct
ggcgacctgcgctccgagcttgccgacaccacgtcggatctcaagcagaagaagctcatg
aagcggttgaagatcgtcgagaacttcatggagtcgggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcattccgccggatctgcgtccgctcgttccgctggatggcggt
cgtttcgcgacctcggacctgaacgatctctatcgtcgcgttatcaaccgcaacaaccgt
ctgaagcgcctgatcgagcttcgcgccccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgtgtcgactattccggccgttcggtcatcgtcaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctatgcccgtctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaaacctgaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgtgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctactacctgtcgatcctcaaccag
aacgagccgggcgaaggcatggccttctccgatctgggcgagctgcaccacgccctcgag
agcaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacgcccggccgtcttctcatcggcgaactg
ctgccgaaaaacggcaaggttcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggctttgctcatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggccaccaaggcgaagatcgttgccgacaccgaaaacctg
gtgaaggaatacgagcagcagtacaatgacggtctgatcacccagggcgagaagtacaac
aaggttgtcgacgcctggggcaaggcaaccgaaaaggtcgccgaagagatgatggcccgc
attaaggctgtcgaattcgatgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgtcccactccggcgcccgcggttctccgaaccagatgcgccagctgggcggcatg
cgcggcctcatggccaagccgtcgggtgaaatcattgagacgccgatcatctcgaacttc
aaggaaggtctgaccgtcaacgagtacttcaactcgacgcacggcgcccgtaagggtctc
gcagacaccgcgctgaagaccgccaactccggttacctgacccgccgtcttgtcgacgtc
gcgcaggactgcatcgtcacgcatgtcgattgcggaaccgaaaccggtctgacgatgacg
gcgatcgtcgacgccggccaggtcgtcgcctcgctcggcgcccgtatcctcggccgcacg
gcgctcgacgatatcgatcatccggtcaccggcgagcgtatcgtcgacgccggcaagatg
atcctcgagcctgatgtcatcgagatcgagaaggccggcatccagtcgatccgcatccgt
tcggcgctcacctgcgaaatccagacgggtgtctgctcggtctgctacggccgcgacctc
gcgcgcggtacgcctgtcaacatgggcgaagccgtcggcgtcatcgccgctcagtcgatc
ggcgagccgggaacccagctcaccatgcgtaccttccaccttggcggtacggcaaccgtg
gtcgaccagtcgttcctcgaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
gtgctgcgcaactcggaaggcagcctcgttgccatgggccgcaacatgaccgtccagatc
ctggacgagcgtggcgtggagcgttcctcgcagcgcgtcgcctacggttcgaagctgcat
gtcgacgaaggcgacaaggtcaagcgcggccagcgtctggccgaatgggatccttacacc
cgtccgatgatgacggaagtggccggtacggttcagttcgaagacctcgtcgacggtctt
tccgttctcgaagcgaccgacgaatcgaccggcatcaccaagcgtcaagtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgttatcaaggacgccagcggc
aatgtcgccaagctgtcgcgcggcggtgacgctcgcttcctgctctcggttgacgccatt
ctgtcggttgagccgggcacgaaggtctcccagggtgacgttctcgcccgttcgccgctc
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactgttcgaa
gcgcgccgtccgaaggatcacgccatcatcgctgagatcgacggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgattacatcctcgacggcaacccggctccgcacgacatcctggcgatcaagggc
gtggaggcactcgcttcctacctcgtcaacgaaatccaggaagtctaccgtctgcagggc
gttgtcatcaacgacaagcacatcgaggtgatcgtccgtcagatgctgcagaaggtggaa
atcaccgacgcaggcgactcgacctatatcgtcggcgacaatgtcgaccggatcgagctc
gaggacgtcaacgaccacctgatcgaacagggcaagaagcccgcccatggcgatccggtt
ctgctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcgtccttc
caggaaacgaccaaggtgctgacggaagccgcgatcgccggcaagaccgatggcctgcag
ggtctgaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgtatcgccacctcgcgcgacgaactgatcctcgaagagcgtcgcaag
ggtaccggtgcagccgttgccactccgatgctgcaggacatggctgaaaaggccccggcc
gcggaataa
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integrated database retrieval system
