Rhizobium phaseoli: AMC79_CH02009
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Entry
AMC79_CH02009 CDS
T04590
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03410
Base excision repair
rpha03430
Mismatch repair
rpha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMC79_CH02009 (recJ)
03430 Mismatch repair
AMC79_CH02009 (recJ)
03440 Homologous recombination
AMC79_CH02009 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_CH02009 (recJ)
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AMC79_CH02009 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AMC79_CH02009 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMC79_CH02009 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF2975
Motif
Other DBs
NCBI-ProteinID:
ANL97804
LinkDB
All DBs
Position
2030816..2032618
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AA seq
600 aa
AA seq
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MADLVDPVQRAFLGVEKSALDNRWVARLDQAGQNRALAMSQVHGLPDLIARVLAGRGVPV
DEAIEFLDPTIRSLMPDPHTLTDCEKAATRLVSAIERGENVAIFGDYDVDGAASSALMFR
FLSHFGVKANIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNI
DVVVIDHHQVTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRI
LALDLLQWLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTLDDAGEAEIIAQRLDELNRERQAMEAMMLQE
AEAEALAEYGDGEGASVIVTAHEKWHPGIVGLLAARLKEKFKRPAFAIAFDPSGRGTGSG
RSINGFDMGRMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVASLVA
NETLKIDGAIGASGATLDLIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTL
EAMDGTRLDGIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQMRVCDAAPAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcagatctcgtcgatccggtacagcgcgcgtttctcggcgtggagaaatccgcgctc
gacaatcgctgggttgcgcggctcgatcaggccggccagaatcgggcgctcgccatgtcg
caggttcacgggctgccggatctgatcgctcgcgtcctcgccgggcgcggcgtcccggtg
gacgaggcgatcgaatttctcgatccaacgatccgcagcctgatgcccgatcctcacacg
ctgaccgactgcgagaaggcggcgacccgcctcgtgagcgcgatcgagcgcggcgaaaac
gtggcgatcttcggcgactacgacgtcgacggcgcggcctcatcggcgctgatgttccgc
tttctcagccatttcggcgtcaaggcgaacatctacattcccgatcggatctttgaaggt
tacggccccaatccggcggcgatcaaccagctgatcgacaatggcgcccggctgatcgtc
accgtcgattgtggctccaccagtcacgaggcgcttgcagctgccgccgcacgcaatatc
gatgtcgtcgttatcgatcaccaccaggtgacacatgagctgccgccctgccatgcgctt
gtcaacccgaaccgcgaggacgatctctcggggcaggggcatctgtgcgcggccggcgtc
gtcttcatggtgctggtggcgacgttaagattactgcgcgcggccggaaacaagcgcatc
ctggccctcgacctgttgcaatggctggacatcgtcgccctcgcgaccgtctgcgatgtc
gtgccgctgaaggggctcaaccgggcctatgtggtcaaggggctggtcgccgcccgtcac
cagagcaatgccgggcttgccgcactcttccgcaaggccgggctcgccggcccggtgaca
ccctaccatttcggcttcctgatcggcccgcgcatcaatgctggcggacgaatcggcgat
gccgcactcggaagccgcctgttgacgctcgacgatgccggcgaagctgaaatcatcgcc
cagcgcctcgacgaactcaatcgcgagcgccaggccatggaggccatgatgctgcaggag
gcggaagccgaagcgctggccgaatatggcgacggcgagggcgcctccgtcatcgtcacc
gcccacgagaaatggcatcccggcatcgtcgggctgctcgcggcacggctgaaagaaaag
ttcaaacggccggcctttgcgatcgccttcgatccctccggtcgcggcaccggctcgggc
cgctccatcaacggcttcgacatgggcagaatggtgcgggcggcggtcgacgaggggctg
ctcgtcaagggcggcggccacgccatggccgccgggctgaccgttgagcgcgccgatctc
ggcaggctcagaaccttcttcaccgaaaaggcggcaaggacggtcgcgagtctcgtcgcc
aatgagacgctgaagatcgacggggcgatcggcgccagcggtgccacgctcgatctcatt
gaccgcctggaggcggctgggccctatggctccggccacgcccagccgctctttgccgtg
ccggcgcaccgtgtgcgcgacgcccgtctggtcggtgagaaacatgtgaaggtgacgctg
gaggcaatggacgggacgcggctcgatggaatcgccttccgcgccgccgatacggcgctc
ggcaatcttctcgtcaattcacgcggcgccagcctgcatgtggcgggtacgctcggcgcc
gatcattaccagggcgcccgccgtatccagatgcgcgtctgcgatgccgcgccggcaaaa
tag
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