KEGG   Roseovarius phycicola: RZ517_05200
Entry
RZ517_05200       CDS       T10600                                 
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
  KO
K05788  integration host factor subunit beta
Organism
rphc  Roseovarius phycicola
Brite
KEGG Orthology (KO) [BR:rphc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rphc03032]
    RZ517_05200 (ihfB)
   03036 Chromosome and associated proteins [BR:rphc03036]
    RZ517_05200 (ihfB)
   03400 DNA repair and recombination proteins [BR:rphc03400]
    RZ517_05200 (ihfB)
DNA replication proteins [BR:rphc03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    RZ517_05200 (ihfB)
Chromosome and associated proteins [BR:rphc03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    RZ517_05200 (ihfB)
DNA repair and recombination proteins [BR:rphc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      RZ517_05200 (ihfB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_bac_2 HU-CCDC81_euk_2 HU-DNA_bdg
Other DBs
NCBI-ProteinID: WWR47572
LinkDB
Position
1008442..1008726
AA seq 94 aa
MIRSELIQKIADENPHLYQRDVERIVNTFFNEITGAMANGNRVELRGFGAFSVKKRDART
GRNPRTGESVPVEEKHVPFFKAGKLLRERLNGKA
NT seq 285 nt   +upstreamnt  +downstreamnt
atgatccgatccgaacttattcaaaagatcgcagacgaaaacccacatctttaccagcgc
gatgtcgagcggatcgtgaacaccttcttcaatgagatcaccggcgccatggccaatggc
aaccgggttgagcttcgcggtttcggtgccttctcggtgaaaaagcgcgatgcccgcaca
ggccgcaatcctcgcactggcgaatctgtcccggtcgaggaaaaacacgtccccttcttt
aaggccggcaagctgctgcgcgaacggctgaacgggaaagcgtaa

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