Roseovarius phycicola: RZ517_08995
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Entry
RZ517_08995 CDS
T10600
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rphc Roseovarius phycicola
Pathway
rphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZ517_08995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphc03019
]
RZ517_08995
Enzymes [BR:
rphc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RZ517_08995
Messenger RNA biogenesis [BR:
rphc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RZ517_08995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
ERCC3_RAD25_C
AAA_22
AAA_11
NAT10_TcmA_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WWR48285
UniProt:
A0ABZ2HSP7
LinkDB
All DBs
Position
complement(1761222..1762502)
Genome browser
AA seq
426 aa
AA seq
DB search
MYDFDMLGLAPQLNTAIKEAGLTEPTPIQNKAIPLALEGHDVLGLAQTGTGKTLAFGLPL
IQHLLDQPGKPREKTVKALILAPTRELVNQIADSLRNLTAKTKLRVVTVVGGQSIGKQIK
LLSRGTDILVATPGRLIDLMDRRALDLSTARHLVLDEADQMLDMGFIHDLRKIAPKLGTP
RQTMLFSATMPKQMEELSQAYLSNPKRVQVAPPGKAADKITQSVHFVPGPEKPSKLREIL
SNDAGALTLVFARTKHGAEKLMKGLVADGFNAASIHGNKTQGQRDRALKAFRQGTVNILV
ATDVAARGIDIPGVAYVINYDLPEVADNYVHRIGRTARAGREGQAIAFCAHEEAGLLRDI
EKLMKITIPVASGTPPTDFTARPKRGQKQGQRRRSGPPRNRSSKPAGNGQAPQGTKRRRP
RRRKAA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgattttgacatgctgggccttgcgccccaattgaacacggccatcaaagaggcc
ggtcttactgaaccaacccccatccaaaacaaggccattccgctggccctcgaaggtcac
gacgttttgggcctcgcccaaaccggcacaggcaaaaccctcgcctttggtctgccgctc
attcagcatttgctggatcagcccggtaagccgcgcgagaaaacggtcaaggccctgatc
ctggcccccacccgcgaactggtgaaccagatcgccgacagcctgcgcaacctgacggct
aaaaccaagctgcgggttgtgaccgtggtcggcggacagtccatcggcaaacagatcaag
cttctcagccggggcaccgatatccttgtggccacgccgggccggttgatcgacctgatg
gaccgccgtgcgctcgatctttcaaccgcacgtcatctggtgctggacgaggccgaccag
atgctcgacatgggctttatccatgacctgcgcaaaatcgcaccgaagctgggcaccccg
cgtcagaccatgctgttttcggccaccatgccaaaacagatggaagaactgagccaagcc
tatttgagcaatcccaaacgggtgcaggtggcacctccgggcaaagccgccgacaaaatc
acccagtcggtccattttgtgcccggcccggaaaagccctccaagctgcgcgaaatcctg
tcgaatgatgccggtgctttgacattggtttttgcgcgcaccaagcatggcgcggaaaag
ctgatgaaaggtctcgtggccgacgggttcaacgccgcctccattcacggcaacaagacc
caaggccaacgcgaccgcgcactcaaggcgttccggcaaggcaccgtcaacatcttggtg
gccaccgatgtggccgctcgcggcatcgacattcccggcgtggcttatgtgatcaactac
gatctgccagaagttgcggacaattatgtgcaccggattggccgcacggcacgcgccggg
cgagagggccaggccattgccttttgcgcccatgaagaggccggattgttgcgcgacatc
gagaaactgatgaaaatcacgatcccggtggcgagtggcacgccgccaacagatttcaca
gcgcgtcccaaacgaggccagaagcaagggcaacgccgtcgttcaggcccaccccggaac
aggtcatcgaaacctgcgggcaatggccaggcacctcaaggcaccaagaggcgcaggcct
cgccgtcgtaaggctgcctaa
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