Roseovarius phycicola: RZ517_12035
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Entry
RZ517_12035 CDS
T10600
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rphc Roseovarius phycicola
Pathway
rphc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZ517_12035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphc03019
]
RZ517_12035
Messenger RNA biogenesis [BR:
rphc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RZ517_12035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WWR45525
UniProt:
A0ABZ2HJL9
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Position
complement(2373420..2375087)
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AA seq
555 aa
AA seq
DB search
MSSERLIYLPLGGAGEIGMNAYVYGYGKPDQERLILVDLGVTFPDMDGSPGVDLIFPDIQ
WLAERSSQLEAVFVTHAHEDHVGAVAHYYEQLGVPIYARAFTANIARRKMEDHGHPEEAV
RTVSAWPEVTDAGPFRVGFVPISHSIPESSGLVIDTPAGRLVHSGDFKMDTDPVVGEPFD
EDLWRSLAEPGVRALMCDSTNVFTHHEGRSESMLGPDIEALIDGCKGAFVATTFASNVAR
VKTLAEAGQRAGRSICLMGRAMRRMIEASIETGVLGDFPRTVSPEDAREIPHENLMLIVT
GSQGERRAASAQLANGKYNGIELRDGDTFLFSSKTIPGNERGVIRIMNQFSEMGVDVIDD
SSGNYHVSGHANRPDLSRLHKIIQPQVVVPMHGEHRHLREHVKLAGENRIGGVLAPNGTM
IDLSGNRAEVVGYVETGRTYLDGSVKIGALDGIVRDRIRMALNGHVTVNVILDEEDEPLG
EPWCEVRGLAETGSSRAPLIDVLEEDLSQFMGRAKSATLSDDDVLEDGLRKVVRNSAMGE
IGKKPEVTVIISRLS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgaacgtttgatctatctgcccctgggcggggcgggcgagattgggatgaat
gcctatgtctatggctacggcaaaccggatcaggaacggctgatcctggtcgatttgggt
gtgacctttccggatatggatggcagccctggcgtagatctgatttttcctgatattcaa
tggcttgcagagcgatcttcacagctggaagcagtgtttgtcacccatgcgcatgaggat
cacgtaggcgctgtggcgcattactatgagcagcttggcgtgccgatatacgcgcgcgcc
ttcacggccaatattgcccgacgcaagatggaggatcacggacacccggaggaggctgtg
cgcaccgtgtctgcctggcccgaggtaacggatgccgggcctttcagggttgggtttgta
cccatatcccattcgatcccggaaagctctggtctggtcattgatacacctgcaggacgg
ctggtgcattcaggcgacttcaagatggataccgatccggtggtcggagagccgtttgac
gaagacctctggcggtctttggccgaaccgggtgtccgggctttgatgtgtgattccacc
aatgtgttcacgcatcatgagggccgctccgagagcatgcttggcccggatatcgaggcg
ttgattgatgggtgcaagggcgcgtttgtggcgacgacatttgccagcaacgtggcgcgc
gtgaagacgctggcagaggccggtcagcgcgcggggcggtcgatttgcctgatgggtcgg
gcgatgcggcgaatgattgaagcctcaattgaaacgggcgtcttgggggatttcccaaga
acagtgagcccggaggatgcgcgcgagatcccacacgagaacctgatgctcattgtgacc
ggaagccagggggagcgccgcgcggccagtgcgcaactggccaatggcaaatacaacggg
attgagttgcgggatggcgatacgttcctcttttcctccaagacgatccccggcaatgag
cgcggcgttatccgcatcatgaaccagttcagcgagatgggggtcgatgtcattgatgac
agcagcggaaactaccatgtctccggccatgccaaccgccctgatctgagccggttgcac
aagattatccagccgcaggtcgtggtgccgatgcatggggagcatcggcatttgcgggaa
catgtgaaactggcgggggaaaaccgcatcggtggggttttggcccccaatgggacgatg
atcgacctcagcggcaatcgcgccgaagtggtgggatatgtggaaactgggcgcacctat
ctggatggatcggtcaagatcggcgcgctggacggcattgtgcgcgaccggattcgcatg
gcgctgaatgggcatgtgacggtcaatgtgatcctggacgaagaggatgagccactgggg
gagccgtggtgtgaggtcagagggctggcggaaaccggaagtagccgcgcgcctctgatc
gatgtgctggaagaagatctcagccagttcatggggcgggcgaaatccgcaacgctgagc
gatgatgacgtgctggaggacgggttgcgcaaggttgttcggaactcggccatgggcgag
attggcaagaaaccggaagtgacggtgattatcagtcgactaagctga
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