Roseovarius phycicola: RZ517_15910
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Entry
RZ517_15910 CDS
T10600
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rphc Roseovarius phycicola
Pathway
rphc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rphc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RZ517_15910 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphc03021
]
RZ517_15910 (rpoB)
03400 DNA repair and recombination proteins [BR:
rphc03400
]
RZ517_15910 (rpoB)
Enzymes [BR:
rphc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RZ517_15910 (rpoB)
Transcription machinery [BR:
rphc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RZ517_15910 (rpoB)
DNA repair and recombination proteins [BR:
rphc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RZ517_15910 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
S4
Motif
Other DBs
NCBI-ProteinID:
WWR46236
UniProt:
A0ABZ2HI83
LinkDB
All DBs
Position
complement(3125527..3129696)
Genome browser
AA seq
1389 aa
AA seq
DB search
MTQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQEIPTDGEGIKGVFQSV
FPIKDFNETAVLEFVNYDLEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYDTVDYKLKK
KGKAVTGWVTKFFPERVRGTRPAFDLVDAKSGKVIAEAGKKVTPRVVKQLIDDGKVTDLL
VPFEHIVGKFVAKDIINEETGAIYVEAGDELTLERDKDGEIIGGSVQELLDAGITDIPVL
DIDNINVGPYMRNTMSNDKNMNRTTALMDIYRVMRPGEPPTEEAASALFDTLFFDSERYD
LSAVGRVKMNMRLALEKPDTQRTLDREDIVACIKALVELRDGKGDVDDIDHLGNRRVRSV
GELMENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMD
QTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLA
TFARVNKYGFIETPYRKVEGGQVTDEVTYMSATEEMRHTVAQANATLDAKGKFVNEMVNT
RQSGEYMLAPVDNVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRSE
APLVGTGIEGVVARDSGASVLAKRAGVIDQVDAQRVVIRATEDLEIGDPGVDIYRMRKFQ
RSNQNTCINQQPLVKVGDTVSKGEVIADGPSTDLGELALGKNVLVAFMPWNGYNFEDSIL
ISERVARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADV
EPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRH
GVEKDERALQIEREEVERLARDRDDELAILDRNIYARLKSLIMGKVAVKGPKGVKANSEI
TEDLLETLSRGQWWQLALKDEKDAQVIEALNEQYEAQKRTLDARFEDKVEKVRRGDDLPP
GVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLEDGTPVDFCLNPLGVP
SRMNVGQILETHMGWAARGLGIKIDDALQDYRRTGDLTPVREAMHHAYGDDVYDEGIAKM
DEGSLIEAAGNVTRGVPIATPVFDGAKEADVNDALQRAGFDESGQSVLYDGRSGEQFARP
VTVGVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA
YTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDVEE
EDEGDIAAE
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagagcttccttggccaaaaacgtcttcgtaaatattacggcaaaatccgcgaa
gtgctggaaatgccgaacctcattgaggtgcagaaatcaagctatgacctgttcctgaaa
tccggcgaccaggagatccccaccgatggtgaggggatcaagggcgtgtttcagtcggtc
tttccgatcaaggatttcaacgaaacagctgtgctggagttcgtgaactacgacctggaa
aagccgaaatacgatgtcgaagagtgtatgcaacgcgacatgacctacagcgcgccgctt
aaggtgacgctgcggctgattgtgtttgatgtcgatgaggacaccggtgcgaagtccgtc
aaggacatcaaggaacaggacgtgttcatgggcgatatgcccctgatgacccccaacggg
acttttgttgtcaacggaacagagcgcgtgatcgtcagccagatgcatcgctctccaggc
gtgttttttgaccatgacaaaggcaagacacatgcttcgggcaagttgctctttgcctgc
cgcatcattccctatcgcggctcgtggctcgattttgagtttgacgccaaggacatcgtc
tttgcgcgcatcgaccgtcgccggaagctgcctgtgacaactctgctttatgcgctgggt
ctggatcaggaaggcatcatggatgcctattacgatacggttgactacaagctgaagaaa
aagggcaaggccgttaccggatgggtgaccaaattcttccccgagcgtgtgcggggcacg
cgcccggcctttgaccttgtggatgccaaatctggcaaggtgattgccgaagcgggtaag
aaagtcacgccacgtgtggtcaaacagctaattgatgacggcaaagtcaccgatcttttg
gtgccgtttgagcacatcgttggcaagtttgtcgccaaggacatcatcaacgaagaaacc
ggtgcgatttatgtcgaggccggggatgagttgacgcttgagcgcgataaagatggcgag
atcattggcggctcggtgcaggagcttttggatgccgggatcaccgacattccggttctg
gacatcgataacatcaatgtcgggccgtatatgcgcaacaccatgtccaatgataagaac
atgaaccgcacaacggcgctcatggatatctaccgggtcatgcgtccgggcgagccgccc
accgaagaggcggcctcggctctgttcgacacgctgttctttgatagtgaacggtatgac
ctgtcggcggttggccgggtgaagatgaacatgcgcctggcgcttgaaaagccggacaca
cagcgcacgctggaccgcgaagacatcgtggcctgtatcaaggccctggtcgaactgcgc
gatggcaagggcgatgtggacgatatcgaccacctcggaaaccgtcgtgtgcgctcggtc
ggtgagttgatggagaaccagtaccgtgtgggtttgctgcggatggagcgcgcgatcaaa
gagcggatgagctcggttgagatcgacacggtcatgccgcaggacctgatcaacgctaaa
ccggctgctgcggctgtgcgtgagttctttggctcctcgcagctgtcgcagttcatggac
caaaccaacccgctgtccgaagtaacgcataagcgtcgtttgtcggcgcttgggcccggt
ggtctgacccgcgaacgggctgggtttgaggtgcgcgacgtgcatgccacgcattatggc
cgcatgtgcccgattgaaacgccggaagggccgaatattggtctgatcaactcgctcgcg
acctttgcgcgggtgaacaaatacggctttatcgaaacaccatatcgcaaggttgagggc
gggcaggtgacggacgaagtcacgtacatgtccgcaaccgaagagatgcgccacactgtg
gcgcaggcgaatgcgacgctggatgccaaaggcaagttcgttaacgagatggtcaacacc
cgtcaatcgggtgaatacatgttggctccggtcgacaatgtggacctcattgacgtgtcg
cccaaacagttggtctcggtggcggcctcgcttattccattcttggaaaatgacgacgcc
aaccgcgccttgatgggctcgaacatgcaacgtcaggccgtgccgacgctgcgctccgag
gcgcctctcgtgggcaccgggatcgaaggcgttgtggcgcgcgactctggtgcgtcagtc
ttggccaagcgggctggtgtgattgaccaggtggatgcgcaacgggtggtgatccgggcg
accgaggaccttgagatcggtgatccgggcgttgacatctaccggatgcgtaaattccag
cgctcgaaccagaacacctgtatcaaccagcagccgctggtgaaggtgggcgatacggtc
tcgaaaggcgaggtgatcgccgatggtccgtcgaccgatctgggcgaattggctctgggt
aagaacgtgctcgtcgcgttcatgccatggaatggctacaactttgaggactcgatcctg
atttccgagcgtgtggcacgcgacgatgtctttacctcgatccatatcgaggaattcgag
gttgccgcccgtgacaccaagctggggccggaagagatcacccgggatatccccaacgtc
ggcgaggaggctctgcgcaatcttgacgaggcgggcattgtctatatcggtgctgatgta
gagccgggcgatatccttgtgggtaagatcacaccgaaaggtgaaagcccgatgacgccg
gaagaaaagctcttgcgcgcgatcttcggggagaaggcctctgacgtgcgcgacacctca
cttcgggtgaagccgggggattatggcacggttgtggaagtgcgcgtctttaaccgccat
ggcgtggaaaaagacgaacgtgcgcttcagattgagcgcgaagaggtcgagcgtctggcg
cgtgaccgcgatgacgagctggcgatcctggatcgcaacatctatgcgcgtctgaagtca
ctcatcatgggcaaagtggctgtcaaaggccccaaaggtgtcaaggcgaactcggagatc
accgaggacctgctggaaacgctgagccggggtcaatggtggcagctggcgctcaaggat
gagaaagacgcgcaagtgatcgaggccctgaacgagcaatatgaggcgcagaagcggaca
ctggacgcgcgttttgaggacaaggtcgagaaggtgcgtcgcggtgatgatcttcctccg
ggtgtgatgaagatggtcaaagtctttatcgcggtgaagcgcaagcttcagccgggtgat
aagatggccgggcgtcacggcaacaagggtgtgatctccaaggttgtgccaatggaagac
atgccgttccttgaagatggaacgccggtcgacttctgcctcaacccactgggtgtgccg
tcccgtatgaacgtcggtcaaattctggaaacccacatgggttgggccgcgcgtggcctg
ggcatcaagattgacgatgccctgcaagactatcgccgtacaggcgatctgacacctgtg
cgcgaggccatgcatcatgcctatggcgacgatgtctatgacgagggtattgccaagatg
gatgagggatcgcttatcgaggcggcgggcaacgtgacccgtggtgtgccgattgcgact
cctgtctttgacggtgctaaagaagcggacgtcaacgatgcgctgcaacgcgccgggttt
gatgaaagcggtcagtcggtcctctatgatggccgctcgggtgagcaatttgcccgccca
gtgaccgtgggtgtcaaatacctgctcaagctgcaccacctggtggacgacaagatccac
gcgcgctcgaccgggccttacagccttgtcacccagcagccactgggcggcaaagcgcag
tttggtggccagcgctttggtgagatggaggtttgggcgcttgaagcgtatggcgcagcc
tacacgcttcaggaaatgctcaccgtcaagtcggatgacgtggcgggtcggaccaaagtc
tacgaaagcatcgtcaagggcgaggacaactttgaggccggtgtgccagagagctttaac
gttctcgtcaaagaagtccgtggcctcggcctgaacatggaactcctggatgtggaggag
gaagacgaaggggacatcgcggcggagtaa
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