Ruditapes philippinarum (Manila clam): 132712701
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Entry
132712701 CDS
T09557
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132712701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132712701
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
132712701
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
132712701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
132712701
NCBI-ProteinID:
XP_060551099
LinkDB
All DBs
Position
Unknown
AA seq
158 aa
AA seq
DB search
MSAPMVCVPGQRLCREEDKLKAGRGTYTRNSFIYSSLAGPLITTNNEDGMTLVEVVRNAE
EYVVPSVDALVTAKVTNVNPRFCKCAIIRVGKTTLKDSFRGMIRKEDVRATEKDKVEMYK
CFRPGDIVIARVISLGDSQSYLLTTAENELGVVIATSE
NT seq
474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcccatggtttgtgttccaggacagcgtttatgtagggaagaagataagttg
aaggctggtcgaggcacttacaccagaaacagtttcatatattcatcactcgcaggtcca
ttaataactacaaacaatgaagatgggatgacattggtggaggtggtgaggaatgcagag
gaatatgttgtcccatctgttgatgctctagttacagcaaaggtgaccaatgtgaaccct
aggttttgtaaatgtgccatcattagagttggaaaaactacattaaaagattccttccgt
gggatgataaggaaggaagatgtcagggccactgaaaaagataaggttgagatgtataaa
tgtttcaggcctggtgatattgtgattgctagagtgatctcccttggtgattcacagtct
taccttcttactacggcagaaaatgaattgggagttgtcatagcaaccagtgaa
DBGET
integrated database retrieval system
