Ruditapes philippinarum (Manila clam): 132713003
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Entry
132713003 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03082
ATP-dependent chromatin remodeling
rphi03083
Polycomb repressive complex
rphi04330
Notch signaling pathway
rphi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132713003
03083 Polycomb repressive complex
132713003
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
132713003
04350 TGF-beta signaling pathway
132713003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rphi03036
]
132713003
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
132713003
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
132713003
HDAC complexes
Sin3A-HDAC complex
132713003
BRAF-HDAC complex
132713003
REST complex
132713003
SHIP complex
132713003
MiDAC complex
132713003
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
132713003
Heterochromatin formation proteins
Other heterochromatin formation proteins
132713003
Chromatin remodeling factors
NuRD complex
132713003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
132713003
NCBI-ProteinID:
XP_060551424
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MASQPHSKKRICYYYDGDIGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAT
QEEMTKFHSDDYIKFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGMYEFCQLSTGGSVAG
AVKLNKQAADIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGXYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDEAYETI
FKPVMTKVMEMYQPSVIVLQCGADSLSGDRLGCFNLTLKGHGKAVEFMKKWNLPLMLLGG
GGYTIRNVARCWTHETSIALNVEVANELPYNDYFEYYGPDFKLNISPSNMANQNTGEYLE
KIKTRLFENLRMLPHAPGVQMQAIPEDALNDESDNEDKENPDSRISIRASDKRIHCDEEF
SDSEDEMSGPNEAGGRRDRTSHKPKHKRPKTDDEKKAEGAKSDNKDGEKKEVKKESDTNE
NAKDKDQNMEEKDKPAAPEQPEKKATDSTKPDAPADENKDTAKTEEKPAS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacaaccgcacagcaaaaagcgaatttgctattattatgatggtgacattggc
aactattattatggacagggacatcccatgaaaccacaccgtatacgcatgacacataat
cttattcttaattatggtctctacagaaagatggaaatatatcgaccacacaaggccacc
caggaggaaatgaccaagttccatagcgatgattatatcaagtttttacgaagtatacga
ccagataatatgtccgaatataataaacagatgcagagattcaatgtcggtgaagattgc
ccagtatttgatggcatgtatgaattctgtcagctgtcaacaggaggatctgttgctggg
gcagtaaagttgaacaaacaggcagcagatattgctataaactgggccggtggtctacat
catgctaagaaatcagaggcatcaggattctgttatgttaatgatattgtacttgccatt
ctggaattactcaaataccatcagagagtgttatatatagatattgacattcaccatgga
gacggtgtagaagaagcattttatacaacagatcgtgtgatgactgtctcattccataaa
tatggataatatttccctggtacaggagatcttagggatataggtgcaggaaaagggaaa
tattatgctgtcaactttcctctaagagatggtattgatgatgaagcatatgaaactatc
ttcaaaccagtgatgaccaaggttatggagatgtaccagcctagtgttatagtgctacaa
tgtggggctgactcactatcaggggacagactgggttgttttaatcttactctcaaaggt
catggtaaagctgtagagttcatgaagaaatggaatcttccattgatgttactgggtgga
ggaggttataccattagaaatgtagctagatgctggacacatgaaacatctatagctctc
aatgtagaagttgccaatgaattaccatacaatgattactttgagtattatggaccagac
ttcaagttgaacattagtccctcaaatatggccaaccagaacacaggagaatatctggaa
aaaatcaagacaaggttgtttgagaatttgagaatgttgcctcatgcaccaggtgttcaa
atgcaagctataccagaagatgccctcaatgatgagagtgataatgaagataaagaaaac
ccagacagcagaatctctatacgtgccagtgataaacgtatccactgtgatgaagagttt
tcagactcggaagacgagatgtcaggaccaaacgaggccggaggtagacgagacagaacg
tcacacaaaccaaaacataaacgacctaaaacagacgatgagaaaaaagctgagggtgct
aaatcagacaacaaggacggtgagaaaaaggaagtgaagaaagaatctgacaccaatgaa
aatgctaaagataaagatcaaaatatggaagagaaagataaaccagctgcccctgaacaa
cctgagaagaaagcaactgactcaactaaacctgatgccccagctgatgaaaataaagac
actgcaaaaacagaagaaaaaccagcatcataa
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