KEGG   Ruditapes philippinarum (Manila clam): 132713423
Entry
132713423         CDS       T09557                                 
Name
(RefSeq) high mobility group protein B1-like
  KO
K10802  high mobility group protein B1
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03410  Base excision repair
rphi04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    132713423
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    132713423
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rphi03036]
    132713423
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132713423
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rphi04147]
    132713423
Chromosome and associated proteins [BR:rphi03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    132713423
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     132713423
   MMR (mismatch excision repair)
    Other MMR factors
     132713423
Exosome [BR:rphi04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   132713423
SSDB
Motif
Pfam: HMG_box HMG_box_2 HMG_box_5 HMG_WDHD1 PTR2 ANAPC15 DUF3245
Other DBs
NCBI-GeneID: 132713423
NCBI-ProteinID: XP_060552002
LinkDB
Position
Unknown
AA seq 205 aa
MPKAKTDKPKGRMSSYAYFVQCCREEHKKKHPGENVVFAEFTKKCASKWKEMTPKEKKRF
EEMAEKDKARYEKEMSTYVPPAGGPVKGKKRTKDPNAPKRALSAFFVFCNEERPKVRAIH
PGYTVGDVAKELGKRWEAVSDRSKFEKLAAEDKKRYEAEMEVYRSGGASPKKAAGRSPQK
KQKVQESEEEEDSDEEEEEDEDDDE
NT seq 618 nt   +upstreamnt  +downstreamnt
atgcctaaagccaaaactgacaagccaaagggacgtatgtcctcttatgcttactttgta
cagtgttgtcgtgaggagcacaagaagaaacatccaggagagaatgttgtttttgcagaa
tttaccaaaaagtgtgcttctaaatggaaggaaatgacaccaaaagagaagaaacgtttt
gaggagatggcagagaaggacaaggccagatatgaaaaagaaatgtcaacttatgttcca
ccagcaggtggacctgtgaaaggaaagaaaaggaccaaggacccaaatgcccccaaaagg
gctctgtcagccttctttgtgttctgtaatgaggagaggccaaaagtgcgtgcaatccac
cctggatatactgtaggagatgttgcgaaggaactaggaaaacgttgggaggctgtcagt
gaccggtcaaaatttgaaaagttagctgcagaagacaagaaaagatacgaagctgagatg
gaagtttacagatcaggtggtgcaagcccaaagaaagctgcaggtagatcaccacagaag
aagcagaaggttcaagagagtgaagaagaagaagatagtgatgaggaggaggaagaagat
gaggacgatgatgagtaa

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