Ruditapes philippinarum (Manila clam): 132714384
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Entry
132714384 CDS
T09557
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03022
Basal transcription factors
rphi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132714384
09124 Replication and repair
03420 Nucleotide excision repair
132714384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132714384
03036 Chromosome and associated proteins [BR:
rphi03036
]
132714384
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132714384
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132714384
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132714384
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132714384
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132714384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
nSTAND3
SLFN-g3_helicase
AAA_11
YjfB_motility
Eco57I
SesA
VbhA
AAA_25
Motif
Other DBs
NCBI-GeneID:
132714384
NCBI-ProteinID:
XP_060553229
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQFMYMMELKKTLDAKGHCVLEMPSGTGKTVSLLSLVVAYI
KGNPDEVNKMIYCSRTIPELEKVVEELKNLIEYYEKETCEKQNILGLALSSRKNLCIHPR
ASQGLEGTSVDAECQKMTVSYVRNKHKNDDSIELCDFFENWDKTGKGSVLPTGIYGLDEL
KEYGAKKGWCPYFLARNAIMQADVVVYSYYYLLDPKIADIVSKELSKKSCVVFDEAHNID
NVCIQSMSVQITKKTLDRCQQNMDTLTRHINRIKESDTERLKEEYKRLVEGLKETNLNRE
TDVIMANPVIPDEILQEAVPGNIRNAEHFISFLRRFCEYLKTRLRVQHVVSETPPSFLKD
CSQKVCIERKPLRFCSERLASLLRTLELADVSDFKALTLISHFATLVSTYAKGFMLIFEP
FDDRTPTISNPILNFSCLDASIAVKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVNMAM
FTMTLARTCICPMIISKGNDQVAMSSKFESREDPAVIRNYGNLLVEMCGIVPDGLVCFFT
SYIYMESTVASWYEQGIIDQIQKHKLLFIETQDAAETTLALLNYQKACENGRGAVLLSVA
RGKVSEGVDFDHHLGRAVIMFGVPYVYTQSRYLKARLEYLRETFQIRENDFLTFDAMRNA
AQCVGRCLRGKTDYGIMVFADKRFARADKRGKLPKWIQEHLKDSLCNLSTDEGVQVAKRF
LRQMAQPFSQEDQLGLSLLTLEQIQSEEMRKKIECKMQYV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaatgtggatggactgctcgtatattttccgtatgactatatatacccagaa
cagtttatgtacatgatggagctaaagaagacactggatgccaaaggtcactgtgtcctt
gaaatgccgtctggtactgggaaaacagtgtcattattgtcactggtagtggcatacatt
aagggaaatccagatgaagtaaacaaaatgatttactgctcaagaactataccagaatta
gaaaaagttgtagaggagttgaagaatctgattgaatattatgaaaaagaaacatgtgag
aaacaaaatattttgggacttgctttgtcgtcaagaaagaatctgtgtatacatcctaga
gcttcccaaggactagaaggaacctctgttgatgcagagtgtcagaaaatgacagtatca
tatgtccgaaacaaacataaaaatgatgattcgattgagttgtgtgacttctttgaaaat
tgggataaaactggaaaagggtcggttttacctacaggaatatatggcttggatgaattg
aaagaatatggcgcaaagaaaggctggtgtccatattttttagctaggaatgcaataatg
caggcagatgttgttgtgtacagttattactacctcctggatccgaaaatagccgacatt
gtatcaaaagaactctcgaagaaatcgtgtgtggtgttcgatgaggcgcacaatattgat
aatgtatgtattcagtctatgagtgttcagattacaaagaaaacattagacagatgtcag
caaaacatggacactcttacacgtcacattaacaggattaaagaatctgacactgaaaga
ttgaaggaagaatataagaggctagtggaggggttgaaggaaacaaatctaaacagggaa
acagatgttataatggcaaatccggtcattcctgatgagattttgcaagaggcagtccca
ggaaatataagaaatgcggaacattttatttcatttctacgtcggttttgtgagtattta
aagacaaggttaagagtacaacatgtagtgtctgaaactccgccatcatttctcaaggat
tgttcacagaaagtatgtattgaaagaaagccattgagattttgttcagaaaggctagca
tcattgttgcgtactttagaactagcagatgtgtctgacttcaaggctttaactttaata
tcacacttcgctacacttgtcagcacatatgcgaaagggttcatgcttatctttgagcct
ttcgatgaccgaactccaactatctcaaatccaatccttaacttcagttgtttggatgca
tcaatagcagttaagccggtctttgacaggttccagagtgttgtgattacatctggaact
ctttcacccttagacatgtacccaaagatccttgatttccgtccagtaaatatggcaatg
ttcacaatgactttagcaaggacttgtatctgtccaatgataatcagtaaaggaaatgat
caggttgcaatgagttctaagtttgagtctcgagaagatcctgcagtgattcgtaactat
ggtaacctacttgttgaaatgtgcggaatagtgcccgatggtcttgtgtgtttcttcaca
agctatatttacatggagtctacagtggcctcctggtatgagcagggaatcattgaccag
atacagaaacacaagttgctgtttatagaaacacaagatgcagcagagaccactttggca
ctacttaattaccagaaagcttgtgagaatggtaggggagctgtactactgtctgtagca
agagggaaagtttcagaaggtgtcgattttgatcatcatctaggtcgagctgttatcatg
ttcggtgtaccatatgtctacacacaaagcaggtatctcaaagcccgtctcgaatattta
agggaaactttccagattcgagaaaacgatttcctgactttcgatgcaatgagaaatgcg
gcgcagtgtgttggtcgatgtctgagagggaaaactgactatggtatcatggtgtttgca
gataagaggttcgcccgagccgacaagagaggtaagctaccaaagtggatacaagagcat
cttaaagacagtttatgcaacttgtcaacagacgagggagtgcaggtggcaaaacggttt
ctaagacagatggcacagccgttcagtcaggaagatcaacttggtctgtcactgctcaca
ttggaacaaatacagtcggaagaaatgagaaagaaaattgagtgtaaaatgcagtatgtc
taa
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integrated database retrieval system
