Ruditapes philippinarum (Manila clam): 132714535
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Entry
132714535 CDS
T09557
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rphi03021
]
132714535
Transcription machinery [BR:
rphi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
132714535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_12
TPR_16
TPR_CcmH_CycH
TPR_17
TPR_10
TPR_11
ARM_TT21_5th
TPR_7
TPR_Slam
ANAPC3
ARM_TT21_4th
TPR_9
PknG_TPR
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
132714535
NCBI-ProteinID:
XP_060553414
LinkDB
All DBs
Position
Unknown
AA seq
1188 aa
AA seq
DB search
MKVYQQVWFPTLIIAIKNESLGPVQRKLGSSMAAIEIPLRDTDEIIELGLDQLPEGEEVL
SILRQEVAPLHIWFTLALEYYKQNLIEDFVKILDASRTDAGLDYPNSEKDQMKALDTLAA
YYVQKAHREKNKDRKRELFTQATLLYTTADKIIMYDQNHLLGRAYFCLLEGDKMDQADAQ
FNFVLGQATNNIPSLLGKACIAFNKKEFRGALAYYKRALRTNPNCPASVRLGMGHCFIKL
NKGEKARMAFERALQLDHQCVGALVGLAILELNAKTQDSIKNGVQLLSKAYNIDSTNPMV
LNHLANHFFYKKDYKKVQHLALHAFHNTENEAMRAESCYQLARAFHVQEDYDQAFQYYYQ
ATQFASPNFVLPFFGLGQMYIYRGDNENASQCFEKVLKAQSNNYEAMKILGSLYSSSPDQ
TRKDTAKAHLKKVTEQFPDDLEAWIELAQILEQSDVQGALSAYGTATRILKDTVKQDVPP
EILNNVAALHFRLGNLTDAKKYYTASLERSRAEAMHDETYFSAISVTTTYNLARLHEATH
EYDEAERLYKNILREHPNYVDCYLRLGCMARDRGQIYEASDWFKEALQINQDHPDAWSLI
GNLHLAKQEWGPGQKKFERILARPATKDDAYSLIALVTSGCKTLHMPMKDKIRYQKRHQD
RALAMYKQVLRNDDRNIWAANGIGCVLAHKGCINEARDVFAQVREATADFCDVWLNIAHI
YVEQKQYVAAVQMYENCLKKFFKYHNTEVMVYLARAYYKCGKLRECKNILLKARHVSPSD
TVLLYNIALVQQKLATSILKDEKSNLKTVLSAVRDLELAHRYFSYLSHHGDRMKFDLAQA
ATEARQCSDLLSQAQYHVARARKIDEEEQELRKHREEEREAIRQKYKEEQLQKQKKKEEL
SKMMMEKRQIYVDKAKQIALAPEPEERRSTKSKKKRADDGEILSEGSEDERPRSKKKRGR
KPRSGSDSDGDDEERSSKRKRKDKGDRKPRERKRKEPKESKRKKKILDEDGLTAKQRRKI
VSKATISSSEGSDSEGEKLKIDVGGDSGSDDEGGNVGKRRRILSSGSESDEGSVHRSRSR
SQSGSRSGSGSRSRSRSGSRSVSRSRSRSASGSRSGSAGSRKSRSRSGSRSRSGSPARSR
SGSPARSGSGRSRSPSPAGSQRSGSGSPGQRSRSGSPASPAGSGSGGD
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttaccaacaagtttggtttcccacattaatcattgccattaagaatgaaagc
ctgggaccagttcagcggaaattaggatcaagcatggcggcgattgagattccgcttcgg
gacacagatgagatcatagagcttggtctcgaccagcttcccgagggtgaggaagttctt
agtattttgagacaggaagttgcaccactccatatttggtttacgctagctcttgaatat
tataaacagaatcttatagaagattttgtcaaaatcctcgatgcctcaagaacagatgct
ggcctggactaccctaatagcgagaaagatcaaatgaaggcgttagatacgctggctgcg
tactatgtacaaaaggctcacagagagaagaacaaggatcggaagagggagctgtttacg
caggcaacattgttatacactacagctgataaaatcatcatgtacgaccagaatcattta
ctgggacgtgcttacttttgtttgctggaaggagataagatggaccaggccgatgctcag
tttaactttgtgttgggccaggcaaccaataacatcccttcattactcgggaaggcatgt
attgcgttcaacaagaaagagtttcgtggtgcactggcatattataaaagagcattgcga
accaaccctaattgtcctgcatctgtccgtctgggtatggggcattgctttataaagctg
aacaagggggaaaaagccaggatggcgtttgagagagctctacaattagatcaccagtgt
gtaggtgccctggtgggattggccatattggagctgaacgctaagacgcaggactctatc
aaaaatggtgtgcagttgttgtctaaagcttacaacattgactcgacaaatcccatggtc
cttaatcatctagctaaccatttcttctataaaaaggattataaaaaagttcagcatcta
gccctccatgctttccacaacactgagaatgaagcaatgcgtgctgagagctgttaccaa
ttagcaagagctttccatgttcaggaggattatgaccaagctttccagtattactaccag
gccacacaatttgcttcccctaactttgtattacctttcttcggtctgggacagatgtat
atctatagaggggacaatgaaaatgcttcacaatgttttgagaaagtactaaaagcccag
tcgaacaattacgaagccatgaagattttaggctcactttactccagttctcccgatcag
acaagaaaggacactgcgaaggcacatctgaagaaagttactgaacaatttcccgatgat
ttggaggcctggatagagcttgctcagatccttgaacagtctgatgtccagggggcactt
tctgcatacggaacagccactcgtattctcaaagacacggtcaaacaagacgttccgccc
gagatactcaacaacgtagcagctctgcatttccgattaggaaatctaactgatgctaaa
aaatattacactgcatcattagaacgttcgagggctgaagctatgcatgatgagacgtat
tttagtgcaatatccgtgacaaccacgtacaatcttgctcgtcttcacgaagctactcac
gagtacgacgaagccgagagactttataaaaatatcctccgtgaacatcccaactatgtc
gactgttatttacgactgggatgtatggcaagagataggggacaaatttacgaggcctcc
gattggtttaaagaagctttacaaataaatcaggatcacccagatgcttggtcgttgatt
ggtaatcttcatcttgccaaacaagaatggggtccgggacagaagaaatttgagcgtatc
ttagctcgaccagcgaccaaggacgatgcatattctcttatcgccctggtaacgtctggc
tgcaaaacattacacatgccaatgaaggacaagataaggtatcaaaagcgtcatcaagat
cgggcattggccatgtataaacaagtccttagaaatgatgacagaaacatctgggctgcc
aatggaataggttgtgtacttgcacataaaggctgtataaacgaggcaagagacgtgttt
gcccaggttcgagaagctacagcagatttctgtgatgtatggttgaatattgctcacatc
tacgtggaacagaaacaatatgtggcagccgtccagatgtacgaaaattgtctgaagaag
tttttcaaataccataacacagaggtgatggtttatttagcgagggcctactacaaatgt
ggaaagctgagagaatgtaaaaatattttactcaaggcacggcacgtctcgcccagtgat
actgtattgttgtataacattgccctggtacagcagaagcttgcgacgtccatattgaaa
gatgaaaaaagtaacttaaaaactgtattgtctgccgtcagagatttggagctagcccac
agatacttttcttaccttagtcatcatggtgacaggatgaagtttgatcttgcccaagct
gccactgaggccaggcagtgctccgatttgttgagtcaggcacaatatcacgtggctcgt
gcaaggaagattgacgaggaagagcaggagttacgtaaacatcgtgaggaggaacgtgaa
gccatacgccagaaatacaaagaggaacagctccagaaacagaagaagaaggaagagtta
tcgaagatgatgatggagaagagacagatttacgtcgacaaagcgaaacagattgctctc
gcaccagaaccggaagagagacggtcgactaagtcaaagaaaaaacgagcagatgatgga
gagatcttgtctgagggaagtgaagatgaacggcctagaagcaagaagaaacgagggcgt
aaaccgcgtagcgggtcagatagtgacggtgatgacgaggaaaggtcaagtaaacgtaaa
aggaaggataaaggcgatagaaagccacgtgagaggaagcggaaagaaccgaaagagtct
aaacgtaagaagaagatccttgatgaggacgggctgaccgctaaacagaggagaaagatc
gtttcaaaggcaaccatttcatctagtgaagggtctgactcggaaggtgaaaagctaaaa
atagacgttggcggcgatagtggaagtgatgatgaaggtggaaatgtcggtaaaaggcga
aggattttgtcgtccggcagcgagagtgatgaaggctcagtacatagatctaggtcaagg
tcgcaatctggaagtaggtcaggatctggaagtagatcgagaagtcgatctggaagtagg
tcagtcagcagaagtaggtcaagatcagcgagtgggtcaaggtctggctcagctggttca
aggaaatcaaggtcacgctctggaagtaggtcaaggtcaggcagtccagcaaggtcaagg
tcaggtagtccagctagatctgggagtggaaggtcaaggtcacccagtcctgctgggtca
cagaggtcaggttcagggagtccaggtcagaggtcaagatcagggtcaccagcatcaccg
gcagggtcagggagtgggggagattga
DBGET
integrated database retrieval system
