Ruditapes philippinarum (Manila clam): 132714790
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Entry
132714790 CDS
T09557
Name
(RefSeq) nuclear pore complex protein Nup160-like
KO
K14303
nuclear pore complex protein Nup160
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132714790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132714790
03036 Chromosome and associated proteins [BR:
rphi03036
]
132714790
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
132714790
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132714790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_NUP160_120_M
Beta-prop_Nup120_160
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
132714790
NCBI-ProteinID:
XP_060553700
LinkDB
All DBs
Position
Unknown
AA seq
1409 aa
AA seq
DB search
MADSANSLLYREIYVPSSTATKWKEISLNTGASASTLQDIKVAESCGGYTYNDSGLPLSV
VRNRFIHWKACNDVLELEEESLDLDLYGSKVKFHFQDTAILGGVSIHESHGYVIVLVPTV
ASVHRLIFPHPNKLHKGDLQYIPSDHPLPSIFYDASIAKCMDTRNSHMLNPGGTITSHFT
AAASYYTQDGEALFALANSIGNILLVKMPPLDIQGIVQQFELCQTSVMQKLWTGLVPSVM
RSGQEPQHTVCSLVIQAVRNEACIFAVCKDHRLRVWSCKTHECMVITNLLDFATDVGHAA
SLSPAGSGHTIRKLISTNMADVKLGVHLNFTNSNQFCILQPQVSSSRLQISHRASVFGPE
DDLIDFCMSSTTLVTLWTSSEGTPVVRTLTFGDEGPGPWMEVLLQPAEVADLNIPPHRDP
REVYLERLFQPGRFSKQDIRRALSLQVYSQALDPNVTGEMALGVNTLKQDVTIAVETEVG
GKLKGLFADGVTGLIGLVRKGCVTYLRPCDQVEELYCSSEDLENSEILADICRTDDEQTK
RDVSIVFETLHSISLEISDDLGMQFEQELSTSQNLEMVAGQLVEHVILNHDMENALSEGL
SVAGNMRLINDFTGAVNIILKFLDLSPNIDDDQAMESDDINMTRHLNLNKLFTSKVGCDI
LTLCVEQFSLTRFQLLRDLYLLLLAALRIGNQANIDTQSVATIQNDLLPYTANLLRSYLV
VKWAAQTLAVSTQANSLESNIRQLSSLDISESMIGGQNVGPALIQKIEHSGASLMELFIH
GPGGDKMRTSLSTTSFLDEDSGALWSSGLLKIVKCIASLIWPLSEQFVFAEFLASHCQYL
PLQDYNNLLQHWCEFNCASRCFMQALCYLHFDEPVKAAHCFNTAREGLPNESFLRDRLLQ
SEETQVRKLEVLFYLKVIRQFEEISAPDVVISLANEAISVADEDDPNLPTLWSKVFKYQL
ELGHNSEAYKAMIENPDPSRRKDCLRQLLISLCDRGDLQSLVDFPYIDLEDEVENILESR
ARCMDLTTHNYYDLLYAFHIFRNNYRKAGSVMYEHGMRLGREVPGKAGLQRQAQCYLAAL
NALRLVKPEYSWIIKPMLATKANMAAGDYMRSPTSKHDLEGEEVVNSASNFEILELHDIE
KEFMLVDARLRLLVKDNDPSLSAGGTPGADEMVGLLVKSGMYDRAVIVSRAFDLPLNPIF
ESLTLRCINLTKNSSYHMRGDNDYTSQAWEWLKMNNLTLTNIAKENSSADEAWQLLQQYL
DRYEDRTAQYHRCTATKLLTHGFTLPTWLVISYKGLNSAKLLRLYIEYDLLEEAVSLCVE
YMDSVIETFSGHDSKLFQLKGCLQHQPQTVWLPYTSIDMLRKSLHEHRQERHLGELYQML
EERLQRYMRRLKESSDQVCQPTGQPFYVT
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagcgcgaattcacttttataccgagaaatttatgtgccaagctcgactgca
acaaagtggaaagaaatttctttgaatacaggggcctcagctagcaccttacaggatata
aaagttgcggaaagttgtgggggttacacatacaatgacagtggattgccactttcagta
gtccgaaacagattcatccactggaaagcctgtaatgatgtccttgaacttgaagaggaa
agccttgatcttgacctgtatggatcaaaggtcaagttccatttccaggatacagcaatt
cttggtggagtatccatacatgaatctcatggatatgttattgtactggtgcctacagta
gcgagtgttcacaggcttatctttcctcatccaaacaaacttcataaaggagatttacag
tatataccttctgaccatccactaccttctatattctatgatgcttccatagcaaaatgt
atggatacaaggaactcacatatgttaaaccctggagggacgataacttctcatttcact
gcagcagcatcttattacacacaggatggcgaagccttgtttgctctagctaatagtata
ggaaatatacttcttgtaaagatgccaccgcttgatatacaaggtattgtacaacagttt
gagttgtgtcagacatcagtgatgcagaaactgtggacaggcttggttccttcagttatg
aggagtggtcaggaacctcaacatactgtatgtagcctggtaatacaggctgtcaggaat
gaggcgtgtatatttgccgtctgtaaagatcacaggcttcgagtctggtcctgtaagacg
catgaatgtatggtaattacaaatctcctcgacttcgcaactgatgttggccatgctgca
tctttgtctcctgcaggatctggacatacaatacgtaaactgatcagtacaaatatggct
gatgtcaagcttggtgttcatcttaactttacaaactctaatcagttttgtatcctgcaa
ccacaggtctcttccagtaggctacagataagccatcgggcatctgtgtttggtccagag
gatgatttgattgacttttgtatgagcagtacaacactagttacattgtggacaagttca
gagggaacacctgttgttagaactctaacatttggtgatgaaggtccaggcccatggatg
gaagtgttgttacagccggctgaggttgcagatttgaacataccaccacatagagatcct
cgagaggtgtatctagagaggttgtttcaacctggtcgctttagtaaacaagacattagg
agagctcttagtttgcaggtatacagtcaagctctggatccaaatgtaactggagaaatg
gcacttggtgtaaatacattgaaacaagatgtcactattgctgtggaaactgaggttggt
ggaaaactgaaaggattatttgctgatggtgtgacaggacttattggtcttgtgagaaag
ggttgtgtgacgtacctacgaccatgtgaccaggtggaggagttgtattgttctagtgaa
gacttagagaactcagaaattcttgctgacatatgcagaacagatgatgaacagacaaaa
agagatgttagtattgtatttgaaactttacattctatcagcctggaaatttctgatgat
ctaggaatgcaattcgaacaggaactctcaaccagtcagaatcttgaaatggttgctggg
caactagttgaacatgtgattttaaatcatgatatggagaatgctctatcagaggggttg
tctgtagctggtaacatgagattgatcaatgactttactggagctgtaaatattatcttg
aaatttttggatctctcacccaatattgatgatgaccaagctatggaaagtgatgatatt
aacatgacacgtcatttgaaccttaacaaattatttacaagcaaggttggctgtgacata
ctgacattgtgtgtagaacaattctccctgacaagattccagttattacgagatctgtat
cttcttctacttgctgctttgagaataggaaatcaggctaatatagatacacagtcagta
gcaaccatacagaatgacttgttaccatatactgcaaacctgctcagatcttaccttgtt
gtcaagtgggcagctcaaaccctggctgtatcaactcaggctaactcattggaatcaaat
atcagacagttatcatctctggatatctcagagtcaatgattggaggacagaatgttggt
cctgcccttatacagaagatagagcatagtggtgccagtctaatggaactatttatacat
ggacctggaggagacaaaatgaggaccagtctgtcaactacatcatttctagatgaagat
tctggtgcattatggtcctctggtctactgaagattgtcaaatgtatcgcttcactaatc
tggcctctgagtgagcagtttgtatttgcggagtttttggctagtcattgtcagtatcta
ccactacaggactataacaatctactacaacattggtgtgagtttaactgtgcctcaaga
tgcttcatgcaggcactctgttatctacacttcgatgagccagtgaaagcagcacattgt
tttaatacagctagagagggattacctaatgaaagtttccttagagacagattgttacag
tccgaggagacacaagttagaaaactagaagtcctgttttatctcaaggttattcgacaa
tttgaagagatatctgcccctgatgtggttatctcccttgctaatgaagctattagtgtg
gcggatgaggatgatccaaatttgccgacattatggtcgaaagttttcaagtaccaacta
gagctcgggcacaattctgaagcatacaaggccatgatagagaaccctgatccgagtaga
cgtaaagattgtctacgtcaacttctcattagtctgtgtgaccgcggggatctacaatct
ctggttgacttcccgtacatagatctagaagatgaggtagagaatatactcgaaagtagg
gcacgctgtatggatcttacaacacacaactactatgatctactatatgcatttcatatc
tttagaaacaactacagaaaagctggtagtgtaatgtatgagcatggtatgagactaggg
cgggaagtacccgggaaggcgggcctacagagacaagctcagtgttaccttgctgcactt
aatgcacttagacttgttaaaccggagtactcctggattattaaaccaatgctagccact
aaagctaatatggcagcaggagattatatgaggtcacctaccagtaaacatgatctggag
ggagaggaggtggttaattcagcatcaaactttgagatcctcgaattacacgatatagag
aaggaatttatgttagtggacgctcgtctacgtctcctagtcaaagacaatgatccttcc
ctatctgcaggtggtacaccaggggctgatgagatggttgggttgttggtgaaatctgga
atgtatgacagggctgtcattgtatcaagagcctttgatttgccactcaatcctatattt
gaaagtttgactctcagatgtattaacctaacaaagaacagttcctatcatatgagagga
gacaatgattatacctcccaggcctgggaatggctgaaaatgaacaatcttacactcaca
aatattgccaaggaaaacagttcagcagacgaggcatggcagttgttacagcaatattta
gacaggtacgaagacaggacagcacaatatcatcgttgtacagctaccaaattactcaca
catggctttactttacctacatggctggtcatctcatacaagggattgaattccgccaag
ttgttacgtctgtatatagaatatgaccttctagaagaagctgtcagtctttgtgtagaa
tatatggactctgttattgaaacatttagtggtcatgacagtaaattattccagttaaag
ggttgtttacagcatcaaccacagactgtatggttaccatatacaagtatagatatgttg
agaaaatcattacatgaacatcgacaagaaagacaccttggagagctttatcaaatgtta
gaggaaagattacagcggtatatgagaagattgaaggaatcatcagatcaagtttgtcaa
cctactgggcagccattttatgtcacatga
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integrated database retrieval system
