Ruditapes philippinarum (Manila clam): 132714976
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Entry
132714976 CDS
T09557
Name
(RefSeq) nuclear valosin-containing protein-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132714976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rphi03009
]
132714976
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
132714976
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Nucleolin_bd
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
AAA_28
NPHP3_N
RNA_helicase
ABC_tran
AAA_33
nSTAND3
Mg_chelatase
AAA_25
Rad17
AAA_18
AAA_17
IstB_IS21
ATPase
Viral_helicase1
TsaE
AAA_3
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
132714976
NCBI-ProteinID:
XP_060553904
LinkDB
All DBs
Position
Unknown
AA seq
1371 aa
AA seq
DB search
MGKKKKLKQSGVKRDEIEAGNTETGQTAIMPAVPQTEIQANDVSGLNTNPTAVSEMAIIQ
QNGSSLNTNIEALDNEGGAPKQPFEKPSGSNSIPGGDIRKEKSMKEPAGKYPTGGEILAG
QCDGDRLSPSKKPSIGGGKPQIVKNLNENNRRKGATGKVKRGFVKDVSASRLERKKGGKK
LEEKMEHRMSLKMKKIKDPRLIPRMREYLESRANKNFVSIPLMAEYLQDKYPEYGRKKKR
MFIQYVDKAYSYMEKPSFNDPPPPLSDTDENSNTEKELVEQNGHYVWKNVSEHSREPDIE
GVGDKVTVNNDSFSSSDEEDIISAVESGQLVEYKDTNVINNRLMNLYRNSPTHVSNSVAD
DKKRKAPESSHNTNVKKSKSESKVLYPSPNVMERNISSTGLVGPRRSANDKYFIDRKGDN
ATRDKSDSKESREVTIQKFLGDLPSRTSFSAYVSGKADPRMKGGTLYRVFSSRKESEHQA
SLSHSGITSDNVGVTNSAPKSPTASDLEKESYIIKDPRINRDTDTAGNSEMSGTETPIVS
RGSGKEKISKSQKTKKGKKSGTKVKRQDDSDSESTGKDKGLSVQKSSVTFADVGGNEKNL
IDICKLLVHMRHPEVYQQLGVTPPRGFLLHGPPGCGKTLLANAIAGELDLALIKLAATEI
VSGVSGNSEEKIRDLFDKAAESAPCVVFIDEIDAITPKRETASKDMERRIVAQLLACMDE
LNDNPLCHVLVIGATNRPDSIDPALRRAGRFDREICLGIPDEQSRLRILEVLCRNLRLSA
EFDFNFMAHNTPGYVGADLMALTREAAMTAVNRVFQDLQCDVDNRNNDNTVIPQDSDSST
YVKQDTYTVVTEPGTSTDLTPSSYSSQPGTSLDNNVSISSSVIEQTVANVHLTLPNVILE
QTGSSGEKPGSANSESENVTQMASIPDINISGGNCNGITEENGDDESVNEETRDLNRLKD
DSRTIGDNAGVDSEIIIVSNSLNNNKADKALLSDINVTMATSESKMEVDNEQAEDVGKIG
ETKMESARNKAVVKSTVSNEYTLVLSWLKEHPPLTEEQLTGLFITMDDFKEALRYVQPSA
KREGFATIPDVTWDDIGALHEVREELTLAILAPVRHPEHFKSLGLTRAQGILLAGPPGCG
KTLLAKAVANESGINFISVKGPELLNMYVGESERAVRTVFQRARNSSPCVIFFDELDALC
PRRSGHSEGNSSARVVNQLLTEMDGLEERKQVFIMAATNRPDIIDPAVLRPGRLDKTLYV
GLPTASDRLDILKCITKNSTKPCLSDDVNLTSIAEDIRCDCYTGADLAALVREASISALK
EAILDKERQPNDVIVVNRGHFDCAFMKVKPSVTLKDQEKYDSMRNKLAIGS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagaaaaaactgaaacaatctggtgtgaagagagatgagattgaagcaggt
aatactgagacaggtcaaacagcaataatgccagctgtacctcagacagaaatacaggca
aatgatgtatcaggtttgaatacaaatccgactgctgtcagtgaaatggcaataatacag
cagaatggatcttcactcaacaccaatattgaggcactagataatgaaggtggtgctcca
aagcaaccatttgagaaaccatctggatcaaattcaataccaggtggagatataagaaaa
gagaaaagtatgaaagagcctgcaggtaaatatcctacaggaggagaaatactagcaggt
cagtgtgatggagacagattaagtccatcaaagaagcccagtattggtggaggaaaacca
cagattgtaaagaatttaaatgaaaacaatcggagaaaaggagcaactggtaaagttaaa
agaggatttgtgaaagatgtgtctgcatcaagactagagaggaaaaaaggaggtaaaaag
ttggaagaaaaaatggagcatagaatgagtttgaaaatgaagaaaataaaagacccaagg
ttgatacctagaatgagagagtaccttgaatcaagagccaacaaaaactttgtaagcata
cctttaatggcagaatatttacaggataaatacccagaatatggaagaaagaaaaagcgt
atgtttatacaatatgtagataaagcatattcctacatggaaaaaccatcatttaatgat
ccaccaccacctctctctgacactgatgaaaacagcaacactgagaaggaacttgttgaa
caaaacggtcattatgtttggaagaatgtgtcggaacattcacgagaaccagatatagaa
ggggttggcgataaagtaacggtcaacaatgattctttttcatcatcggatgaggaggat
ataatatcagctgttgaaagtggacaattggtagaatataaggataccaatgtcatcaac
aatagattgatgaacttgtacagaaatagccccacccatgtgtctaactcggtagcagac
gacaaaaaaaggaaagccccagaatcatctcataataccaatgttaagaaatcaaagtca
gaatcgaaggtattgtatcccagtccaaatgtaatggaaagaaatatttcttcaacaggc
cttgttggtcctaggcggtctgctaatgataaatatttcatagacagaaagggggataat
gcaacaagagataaatcagatagtaaagaatcaagggaggtaactatacagaaatttctc
ggtgatttgccatcaagaacatcattcagtgcatatgtgtcaggtaaagctgacccacga
atgaagggaggtactctgtatagagtattttctagcaggaaagagtctgagcatcaggct
agcctatctcacagtggaataacctcggacaatgtgggtgttaccaactcggcaccaaag
tcacccacagctagtgatttagagaaagaatcttatattataaaagatccaaggataaat
agagatactgatactgcaggtaattcagaaatgagtgggacagaaactcctattgtgtca
cgagggtctggtaaagaaaagatcagcaaatcacagaagacaaagaagggaaagaagagt
ggtacgaaggtaaagagacaagatgacagtgactctgaatccactggcaaagataaagga
ctatcagttcagaagtcgagtgtgacatttgctgatgttggtggtaatgagaagaattta
attgatatttgtaaattgttagtacacatgcggcatccagaggtctaccagcaacttggg
gtgaccccacctagagggtttctgcttcatggaccaccagggtgtggtaaaactcttctt
gcaaatgccattgctggggaactggatttggcattaatcaagctggcagctacagagatt
gtgtctggggtgtctggaaattctgaagagaaaattagagatctgtttgataaagctgca
gagagtgctccatgtgtggtatttatagatgagattgatgccattacaccaaagagagag
accgcctccaaagatatggagcggagaattgtagctcagttactagcctgtatggatgag
ttaaatgacaatcctttgtgccatgtattagtgataggagctacaaacagacctgactct
atagatcctgcattacgtagggctggcaggtttgatcgggaaatatgtttaggtataccg
gatgagcagtcaagactaaggattctggaagtactttgcagaaacctgcgactgtcagca
gagtttgattttaatttcatggcacataatacaccgggatatgttggtgctgatttgatg
gcccttaccagagaggctgccatgaccgctgttaaccgggtattccaagacttacagtgt
gatgtggataacagaaataatgataacacagtcattcctcaagattctgattcgtccacc
tatgtcaagcaggacacttatactgttgtaactgaacctggtaccagcactgatctgact
ccaagctcttattcttcacagcctggaaccagtttagataataatgtctcaatttctagc
tcagttattgaacaaactgttgctaatgttcatttgaccttacctaatgtgattttagag
cagactggttctagtggagaaaagccaggctcagctaactctgaaagtgaaaatgttaca
caaatggcatctataccagatataaacattagtggaggaaattgtaatggaattactgag
gaaaatggcgatgatgaaagtgtgaatgaagagactagggacttgaataggttaaaagat
gattcaagaactataggtgataatgctggtgttgatagtgaaattattatagtgtctaat
agcttaaacaataataaagcagataaggctctgttaagtgatattaatgttaccatggca
actagtgaaagtaaaatggaagtagataatgaacaagcagaagatgtgggaaaaattggt
gaaaccaaaatggaaagtgctagaaataaagctgttgtaaaatcaactgttagtaatgag
tatacattggttctgtcatggttgaaggaacaccctcctttaacagaagaacagctcact
gggttatttattactatggatgactttaaggaagctttgagatatgttcagccatcagca
aagcgtgaaggttttgcaacaataccagatgttacatgggatgatataggggcactgcat
gaagtcagggaggaacttacactggctatattggctcctgtacgtcacccagaacatttc
aagagtttaggattgactagagcacagggtatattgctagctggaccaccaggttgtggt
aaaacacttcttgctaaggctgtagctaatgaatctggaatcaactttatatctgtgaag
ggaccagaacttctaaacatgtatgtaggtgagagtgagagagcagtgcgtacagtattt
caaagagcacgtaattcctcgccatgtgtcattttctttgatgaactggatgctttgtgc
ccaagaagatccggccattctgaaggtaactcaagtgctagagttgtaaatcagttactg
acagagatggatggtctagaggaaaggaaacaagtatttataatggctgccactaacaga
ccagatataattgacccagctgttttgagaccaggaaggctcgacaagaccctgtatgtt
ggacttcctacagcttcagataggctagatatactgaagtgtatcacaaagaatagcaca
aaaccatgtttatcagatgatgtaaatttaaccagtattgccgaggatataagatgtgat
tgttacactggagcagatttagcagctcttgtaagggaggcttcaatttcagcactaaaa
gaagccattttagacaaggagagacaacctaatgatgttattgtagttaatagagggcac
tttgattgtgctttcatgaaagtcaaaccatcagttacattaaaggatcaagagaagtat
gactctatgaggaataaacttgctataggaagttga
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