Ruditapes philippinarum (Manila clam): 132715067
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Entry
132715067 CDS
T09557
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
rphi03015
mRNA surveillance pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132715067
09122 Translation
03013 Nucleocytoplasmic transport
132715067
03015 mRNA surveillance pathway
132715067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132715067
03041 Spliceosome [BR:
rphi03041
]
132715067
03009 Ribosome biogenesis [BR:
rphi03009
]
132715067
03012 Translation factors [BR:
rphi03012
]
132715067
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132715067
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132715067
mRNA cycle factors
Stress granule specific factors
132715067
Spliceosome [BR:
rphi03041
]
Complex C
Other components
EJC/TREX
132715067
Ribosome biogenesis [BR:
rphi03009
]
Eukaryotic type
90S particles
Helicases
132715067
Translation factors [BR:
rphi03012
]
Eukaryotic type
Initiation factors
eIF-4
132715067
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
TniB
Motif
Other DBs
NCBI-GeneID:
132715067
NCBI-ProteinID:
XP_060554024
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MSSRRVLSDDLKTLEFETSEDVDVTPTFDSMGLREELLRGIYAYGFEKPSAIQQRSIKPI
VKGRDVIAQAQSGTGKTATFSISTLQCLDTQVRETQALILSPTRELATQIQKVILALGDY
MNVQCHSCIGGTNIGEDIRKLDYGQHVVSGTPGRVFDMIKRRNLRTRSIKMLILDEADEM
LNKGFKEQIYDVYRYLPPATQVILISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK
QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRDANFTVSSMHGEMV
QKERETIMKEFRSGASRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcggcgtgtcttaagcgatgatctgaaaacactagagtttgaaactagtgaa
gatgtggatgtcacaccgacctttgacagtatggggctaagagaagagctgttaagagga
atttatgcttacggttttgagaagccatcagccattcagcagagatcaattaaaccaatt
gttaagggcagagatgtcattgcacaggcacagtctggtacaggaaagactgcaacattc
tcaatctctacactacaatgtcttgacacacaggttcgagaaacacaagctttgattctg
tcaccaactcgtgaattggcaactcaaatacagaaagtcatacttgcacttggtgactac
atgaacgttcagtgtcattcgtgtatagggggtacaaacattggtgaagatatcagaaaa
ctagattatggacaacatgttgtttctggaacaccaggccgagtatttgacatgatcaag
aggaggaacttgagaaccaggtctatcaagatgctgattctagatgaagctgatgaaatg
ttaaacaaaggatttaaggaacagatttatgatgtatacagatacctgcccccggcaaca
caagttattctgatctctgctactttaccacatgaaattctggaaatgacaagcaagttt
atgactgaccctataagaatccttgttaaacgtgatgaattgacactggaaggtatcaag
cagttctttgttgccgtggagagagaggagtggaaatttgacacattatgtgatctctat
gatactcttacaataacacaggctgtcatcttctgtaacacaaagagaaaggtggattgg
ctgacagagaaaatgagggatgctaatttcacagtttcatctatgcatggagaaatggtc
caaaaagaaagggagacaattatgaaagaattcagatcaggggctagtcgagtgttgata
acaacagatgtgtgggctagaggtctagatgtacaacaagtgtcccttgtcatcaactat
gatttaccaaacaacagagaattgtatattcacagaattggtcgatctggaagatttggt
cgtaaaggtgtggccatcaattttgtgaagaatgacgatatcagaattctgagagatatt
gaacagtactattctacacagatagatgaaatgcctatgaatgttgcggatttgatctaa
DBGET
integrated database retrieval system
