Ruditapes philippinarum (Manila clam): 132715381
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Entry
132715381 CDS
T09557
Name
(RefSeq) nucleoporin p58/p45-like
KO
K14307
nucleoporin p58/p45
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132715381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132715381
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
132715381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin_FG2
Motif
Other DBs
NCBI-GeneID:
132715381
NCBI-ProteinID:
XP_060554362
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MSAGFGFNFAKPADGTANTTASGGFAFASSTPASTSGGLNFGQPATKTSASGLTLGTPAV
SQSAFGTQATTNTGLNVTQPTSTGTGLTLGGLSSTTSATPSLFGAASTAPTAAFGFSKPL
TVGSQATTTASTGLGLGLKLGTTTTQSSGLGGFGLTTTKSTTLGSGSIFGQNVAKTTSSG
LGGIGPTTTTATSTSNSSKPGENKVVKEMAVENSILLDVEELRKFVKEEKSEMEQMKRMS
STSMIKVQEDNAALKQLLSLVSSSLQKNACAVDKLKREMTQELKNAEMALRTKETPPGLQ
YENTAPTLYFHSLIEKFEGQMLTYRQQIEILENHLSSLHQPNRHTPEEMVLLLRKLHEAF
VAMAAQLQQIHEAVKTQKEHYLNFRKVFHGDNRNIFERQKKTAVKIGTKSHTDMYGQAPF
PAVNNAAAVAMATALTRSQHPQPTAGAPPVTGMSSFQPSSGFGAPASGFGAFGSTTQAST
FKGFGTGTSNFGTGTSLFGNSSNLATTLAGSLFTSTIPGATPQLNLSSEPFQLNKPPVGS
KRGKR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaggattcggatttaattttgcaaagccagctgatgggacagctaacaccact
gcttctggaggttttgcttttgcctcaagtactccggccagtacatctggtggattgaat
tttggacaaccagcaacaaaaacaagtgcaagtggtttaacacttggtacacctgcagtt
tctcaaagtgcatttggaacacaagctactacgaatactggtttaaatgttacccagcca
acatcaacaggtacaggattaactcttggaggtttatcttcaaccacatcagcaactcct
agcttgtttggtgccgcttcaactgccccaacagctgcttttggtttctcaaagccactt
acagtggggagccaggcaacaactacagcaagtactggtttgggtctcggcctgaaatta
ggaacaacaacaacacaaagtagtggtcttggaggatttgggctaaccaccactaaatct
actacattagggagtggaagtatatttggtcagaatgttgccaagacaacctcatcaggc
ctgggtggtattggaccaacaacaacaactgctacatctacaagtaactctagcaaacca
ggggaaaataaagtagtaaaggagatggctgtagaaaacagtattttactggatgttgaa
gaattgagaaagtttgtaaaagaggagaaaagtgagatggaacagatgaagaggatgtca
tcaacatcaatgataaaagtacaggaagacaacgctgccctcaaacaacttctctctctt
gtctccagctcgttacagaaaaatgcttgtgctgttgataaactaaagagagaaatgaca
caggagttaaagaatgcagagatggcattaagaactaaagagacacctccaggcttacag
tatgaaaacacagcaccaacattatattttcatagcttgatagaaaagtttgagggtcag
atgttgacatacagacagcagatagagattctagagaaccatctgtcctccctccatcag
cccaatagacacacccctgaagaaatggttttattgttgagaaaactacatgaagcattt
gttgccatggcagcacagttacagcaaattcatgaggctgtcaagactcaaaaggaacac
tatcttaactttaggaaagtatttcatggtgataaccgcaatatttttgagcgtcagaag
aagacggcagtgaaaattggtacaaagagtcacacagacatgtatggtcaggccccattt
cctgctgtaaataacgctgcagctgttgctatggcaaccgctctaacacgtagtcaacat
ccgcagcccactgcaggagctccacctgtcacaggcatgagcagttttcaaccttcatca
ggatttggcgcacctgcctcaggatttggtgcatttggatcaactacacaagcatcaact
ttcaaaggttttggaactggaaccagtaacttcgggacaggaacaagtctattcggaaac
agttcaaaccttgcaacaacgctggctggttccctgttcaccagtactataccaggagcc
acacctcaactcaatctctcgtcagagccctttcagcttaacaaacccccggttggatct
aagaggggcaaaagatag
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