Ruditapes philippinarum (Manila clam): 132715521
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Entry
132715521 CDS
T09557
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03013
Nucleocytoplasmic transport
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132715521
09122 Translation
03013 Nucleocytoplasmic transport
132715521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132715521
03041 Spliceosome [BR:
rphi03041
]
132715521
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
132715521
Spliceosome [BR:
rphi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132715521
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
CREPT
RWD
Motif
Other DBs
NCBI-GeneID:
132715521
NCBI-ProteinID:
XP_060554516
LinkDB
All DBs
Position
Unknown
AA seq
705 aa
AA seq
DB search
MDVKDEKEKKRKRTIKLDGSSASGDGKIEAKRIKPDSVKIKQEVPSVNIGRKLFYAEEDE
VEKRDVNKDVELFQSACGDIQRTIAEIKTLKESKGKNAAAEIESKRMEGMLQIVMLKKLN
RLAHIRCKKVRDGTNEAKMRIDRCHLQVQNLLYEIMHLEKEIVKCLGFKSKDEEIDLIPV
DQFYEEAPEEISKPEKTKTDSHQLTLSRLDWELEQRKQLSEKLKDAVKTKEDIENEIKTK
QEHLENLQPKLNNILQSTKPVQEYLDMPFDSVREEHMTAQFLPHPLYVLYMQCSAYKDAC
DSRMKVSLEGDLNAAKSLDLSGPSILDEDSESDQEEPEEQEKKNSKRRRKTVDVKKSEST
SKVLTKHPLSVVIEIICKDGSQLHLTFYYLTYLKIITVGVQVTTSPDVNSPCVSGSDILS
PDLILDDLYPGDHGTASPNLSNQYELSRFGLKDLENYVSQVGRPYLWAQRMGGLQFLDGE
PSKAPKSSISSQTIQFTVKKLRKRIQSRLALLKQLSALERNSIPVSIECMAMFPVKLTSQ
LKSWQRSTYEEFIETPYTQTVVSQGLASESDLYFTAVIERGTAKMTACIVVGSDYPTVAP
LFCINISWGTNRNSQNDSHIQELEEEVNIHYEELVSKKSHDQLLANQLQRLVMCFDVYLE
TEAQSGSNEGPIEIAKEKVFARVTRGRQRSKPYKFNADTGIFSHR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaaaagacgaaaaggaaaagaaaagaaaaagaacaataaaacttgacggttca
tctgcgtcaggtgatgggaaaatagaggcaaaaagaataaaacctgattctgtaaagata
aagcaggaagtaccaagtgttaatattggccgtaaattattttatgctgaagaagatgaa
gttgaaaagagagatgttaataaagatgtggagctttttcagagtgcgtgtggagacatt
cagagaacaattgctgaaatcaagacattgaaagagtcgaaaggcaaaaatgctgcagca
gagattgagagtaagcgtatggaaggtatgttacagatagtcatgctgaagaaactaaat
agacttgctcatattagatgtaagaaggtcagggacggcactaacgaggcgaagatgaga
atagaccgctgtcatctacaagtacagaatcttctctatgaaatcatgcatcttgaaaaa
gaaatagtcaaatgcttaggattcaagtcaaaagatgaagagatagatcttattccggtg
gatcaattttatgaagaagcaccagaggagatatccaagcctgagaagacaaagacagac
agtcatcaactaacattatccagactggactgggagctagaacaaagaaaacaactgtca
gaaaagttaaaggatgctgtaaaaactaaggaggatatagaaaacgagataaaaactaaa
caagagcatctagagaatctacagccaaaactcaacaacatattacagtctacaaagcca
gtacaagagtatctggatatgccatttgacagtgttagagaagagcatatgactgcccaa
ttcttaccgcacccactgtatgtgctgtatatgcaatgtagtgcctacaaggatgcctgt
gacagcagaatgaaagtgagtttggaaggagacctgaatgcagccaagtctctggattta
tcagggccctcaatacttgatgaggacagtgaaagtgaccaagaggaaccggaagaacag
gaaaagaaaaacagtaaacggcgtaggaagacagttgatgtgaagaagtcagagagcaca
tctaaagttctgaccaaacatcccctgtctgttgttatagaaatcatctgtaaagatgga
agtcagttacacctgacattctattatctcacttacttaaagataattactgtaggtgtg
caggtaacaacaagcccagatgtaaactctccttgtgtgtccggaagtgacatcctgtca
ccagatttaattctagatgatctttacccaggagatcatggtactgcctcacctaatctc
agtaatcagtatgaattgtctcgctttggactgaaggatcttgagaactacgtgtcacag
gttggaaggccatatttatgggctcagagaatgggtggtctacagtttcttgatggtgaa
ccttcaaaagccccgaagtcctcaatcagttcacagactattcagtttacagtgaagaaa
ttaagaaagcgtatacagtctaggcttgctctacttaaacaactgagtgcattagaacgc
aacagtattcctgtatccattgaatgtatggccatgtttcctgtaaaacttacaagccaa
ttgaagtcgtggcagaggtcaacatatgaagaatttatagagacaccatacacacagact
gttgtaagtcagggtttagccagtgaatctgatctctacttcacagctgtaatagagcgt
ggtacagcaaagatgacagcttgtatagtggtaggatcagactatccaactgtagcccca
ttattctgtatcaacatttcctggggtactaacagaaactctcaaaatgatagtcatata
caggaactagaagaggaagtgaatatacactatgaggagcttgtcagtaaaaagtcacat
gaccagttattggccaatcagcttcagcggctagttatgtgttttgatgtttacttggaa
actgaggcacaaagcggcagtaacgagggtcccattgaaattgctaaagaaaaggtgttt
gcaagagtaacacgtggtcgacagcggtcaaaaccttacaagtttaatgcagacactggc
atcttctcccacagatga
DBGET
integrated database retrieval system
