Ruditapes philippinarum (Manila clam): 132715572
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Entry
132715572 CDS
T09557
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132715572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132715572
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132715572
Complex C
U5 SnRNP specific factors
132715572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
132715572
NCBI-ProteinID:
XP_060554566
LinkDB
All DBs
Position
Unknown
AA seq
2318 aa
AA seq
DB search
MAYNYVIGPGGQPIILGQVQMIQPLMQVPGAPAPMQQMNTGVPPQQPPVQQTKVPDYMSE
EKLQEKTRKWQQLQSKRYSEKRKFGFVDVQKGDFPPEHVRKIIHDHGDMTNRKFRHDKRV
YLGALKYMPHAVLKLLENMPMPWEQIRDVKVLYHTTGAITFVNEIPWVIEPVYIAQWGTM
WIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAGNILDVEPLEAIQIELDPEEDKCVADWF
YDHKPLVDTKSVNGSTYRKWNLSLPVMSVLYRLGNQLLTDLVDNNYFYLFDLKSFFTAKA
LNMAIPGGPKFEPLVKDKEMQDEDWNEFNDINKIIIRQPVRTEYRIAFPYLYNNLPFQVH
LSWYHWPNIVFIKTEDPDLPAFYFDPLINPISHRHTNKSTDPLPDDDEEFELPEYVQPFM
HDTPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDVXLVKSWYREHPPAGMPVKVRVSYQ
KLLKYYVLNALKHRPPKSQKKRYLFRSFKATKFFETTQLDWVEVGLQVCRQGYNMLNLLI
HRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSFVQYRLGN
VDAFQLADGLQYVFSHVGQLTGMYRYKYKLMRQIRMCKDLKHVIYYRFNTGPVGKGPGCG
IWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHYDLELRAA
VMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVKAKAD
WWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITPEEGVA
IYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIE
QAYDNPHEALSRIKRHLLTQRAFKETGIEFMDLYSHLIPVFDVEPLEKITDAYLDQYLWY
EADKRRLFPPWIKPADLEPPPTLVYKWCQGINNLQDVWDTAEGECNVMMETKFEKMYEKI
DLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFITQYYGLVL
DLLVLGLMRASEMAGPPQMPNAFLQFQDVNTEAAHPIRLYSRYVDRIHIYFRGRAVFWDI
KNRLPRSVTTIEWDGSFVSVYSKDNPNLLFNMCGFECRILPKCRTTHEEFTHRDGVWNLQ
NEVTKERTAQCFLRVDDESMNKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREA
VVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQ
SDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIMPWESEFIDSQRVWAEYALKRQEAN
AQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKAYQVLKQNPFWWTH
QRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKK
LTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIF
RAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKW
NVSKPSLLADSKDVMDNATTQKYWLDIQLRWGDYDSHDVERYTRAKFLDYTTDNMSIYPS
PTGVLIGIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSE
PTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQL
FLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLL
DFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLI
LILRALHVNNDRTKIILKPDKTTITEPHHIWPTLSDEEWMKIEVQLKELILADYGKKNNV
NVASLTQSEIRDIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTKTVNKHGDEIITS
TTSNYETQTYASKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFIII
SDLRAQISGYLYGVSPPDNPQVKEIRCIVMPPQWGTHQTVHLPNILPEHEYLKEMEPLGW
IHTQPNELPQLSPQDITTHAKIMQENLHWDGEKTVIITCSFTPGSCSLTAYKLTPSGYDW
GRQNTDTGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQTSWNYNFMGVRHDPNMKYELM
LSNPKEFYHEVHRPSHFLNFSQMEEGEQIGADREDLFS
NT seq
6957 nt
NT seq
+upstream
nt +downstream
nt
atggcttacaactatgtgatagggcccgggggacagcccatcattctcgggcaggtacag
atgatacagcccttgatgcaggtgcccggggctcctgcccccatgcagcagatgaacact
ggtgttcctccccaacaaccacctgttcagcagactaaagtaccagattatatgtcagaa
gaaaaactgcaagaaaaaaccagaaaatggcagcagctgcagtccaaaagatacagtgaa
aagaggaaatttgggtttgtggatgtacaaaaaggagattttcccccggagcatgtgaga
aaaattattcacgaccacggagacatgaccaacagaaagttcagacatgataaacgtgta
tatctaggtgcattgaagtatatgccccatgcagtgttaaagctgttagaaaatatgccg
atgccatgggaacagattcgtgatgttaaagtactctaccataccactggagctataaca
ttcgtcaatgaaattccatgggtcattgaaccggtctacattgctcagtggggaactatg
tggattatgatgcgtcgagaaaaacgtgacagacgtcacttcaagcgtatgcgtttccct
ccatttgatgacgaggagcctccccttgattatgcaggcaatatcctagatgttgagccc
ctcgaggctatacagattgaactggacccggaggaagataaatgtgtcgcagattggttc
tatgatcataaaccacttgttgatacaaagtcggttaatggtagcacatacaggaagtgg
aacttgtcattaccagttatgtccgtgttgtatcgtcttggcaaccagctgctcacagat
cttgttgacaacaactacttctacctgtttgatttaaagtcattcttcacagcaaaggca
ttgaatatggccatcccaggaggtccaaagttcgagcctctagtcaaggacaaggaaatg
caggatgaagactggaatgagtttaatgatatcaacaagatcatcattcgtcagccagtg
aggaccgagtacaggatagctttcccttacctttataacaacctgccattccaggtccat
ctgtcatggtatcattggcccaatattgtatttatcaagacggaggatcctgatttacct
gccttctacttcgatcctctcatcaaccctatatctcacagacacactaacaagagcaca
gatcccctaccagatgatgatgaagagtttgagctgccggaatacgttcagccgttcatg
catgatactcctttatacaccgataacacagcaaatggcattgccttactctgggctcct
agacccttcaacaccaggtctggccgcacaagaagggcaattgacgtgncactcgtgaag
tcctggtaccgagagcatccaccagctggcatgccagtaaaggttcgagtctcgtaccag
aaacttctgaagtattatgtgctgaacgccttgaaacacagaccgcccaagtcacaaaag
aagaggtacctgttcagatcatttaaagctaccaagtttttcgagacaacgcaattagac
tgggtggaggtaggactgcaagtatgtcgtcaaggttacaacatgttgaaccttctcatt
catcgtaaaaatctaaactaccttcatctggattacaactttaatcttaaacctgtgaag
acattgacgacaaaagaaagaaagaagtcccggttcggaaatgctttccatctgtgtcgt
gaagttctcaggttgaccaagcttgtggttgacagctttgtacagtacagattaggaaat
gttgatgctttccagttagcagatgggttacagtatgtgttctcccatgttggtcagctg
actggaatgtacagatataaatacaagctgatgaggcagataagaatgtgtaaagatctc
aaacatgttatatactacagatttaatacaggtcctgttggtaaaggtccaggttgtggt
atatgggctccagggtggcgtgtatggttgtttttcatgcgaggtattacgcccctacta
gagagatggcttggtaacctgctgtccaggcagtttgaaggtcgtcactcgaagggggtt
gctaagactgtaactaagcaacgtgtggagtcgcattatgatctagaattgagggcagca
gtgatgcatgacattttggacatgatgcctgaaggtataaaacagaacaaggcaagaacc
atcctacagcatctcagtgaggcgtggaggtgttggaaggctaacattccatggaaggta
ccaggattacccatccctatagagaacatgatcttgagatatgtgaaagccaaggcagat
tggtggacaaacacggctcattataacagggagagaatcaggaggggtgcaacagtagat
aagactgtatgtaagaagaatctcggcagactgactcgattatatctgaaggcagaacag
gaaaggcaacataactatctcaaggatggtccatacattacaccagaggagggtgtggct
atctacacaacaactgtccattggctggagagtaggagattttctcctatccctttccct
ccactgtcatacaagcacgataccaaacttcttatcttagctttagaaaggttgaaagaa
gcatacagtgtgaaaagcaggttaaaccagtcacagagagaagagttgggtctcatagag
caagcctatgacaatcctcacgaggccttgtccagaattaaacgtcatcttctaacacag
agagctttcaaagagactggaattgagtttatggatctgtacagtcacctgataccggtg
tttgatgtggaacccctcgagaagataacagatgcgtacctggaccagtacctgtggtac
gaggctgacaagagacggttgtttcctccatggatcaaaccagcagatctagaaccaccg
ccaactcttgtatacaaatggtgtcaaggcatcaacaacttgcaggatgtatgggacacc
gctgaaggggagtgtaacgtgatgatggagacaaagtttgagaagatgtacgagaagata
gatttaacgctactcaacagattgttacgtttgattgtagaccataatattgctgattat
atgactgccaaaaacaacgttgttatcaactataaggatatgaaccacacaaattcatat
ggtattattcgaggtctacagtttgcttcgttcatcacccagtactatggactggtactc
gacttgctggtactcggcttgatgcgagcctctgagatggctggtccccctcagatgccc
aacgccttcctgcagttccaggatgttaatacagaggcggcccatccaattaggctgtac
tcgagatatgtggataggatccatatatacttcagaggtagggcagtgttttgggatatc
aagaacagattacctcggtctgtgacaactatagaatgggacggcagttttgtttctgta
tacagtaaagacaatcctaacttattgtttaacatgtgtggatttgagtgtaggatttta
cccaagtgtagaacaacacatgaggagttcacacacagggatggagtgtggaatttacag
aatgaggtaactaaagagcgtacagcgcagtgtttcctgagagtagatgatgaatctatg
aacaagttccacaatcgtgtcagacagatcctgatggcatctggatccacaacattcaca
aagattgtaaacaagtggaacacagctttgattggattaatgacctactttagagaggct
gtggtcaacacacaggaactgttggacctactggtcaagtgtgaaaacaagattcaaacc
cgtattaagatcggtctcaactctaaaatgcccagcaggttccctcctgtagtcttctat
acaccaaaggagttaggaggtttgggaatgttgagtatgggacatgttttgataccgcag
tcagatctgagatggtccaagcagacagatgtgggtatcacacattttaggtcgggtatg
tcacatgacgaggaccagcttatccctaacttgtacagatatattatgccatgggaaagc
gagttcatagattctcagagagtatgggcggagtatgcattgaagagacaggaggctaac
gcccagaaccgtcgtctaaccctcgaggacttggaggacagctgggaccgtggtatacct
aggattaatactctgttccagaaggacagacacaccctcgcctatgacaagggctggaga
gtgagaaccgagttcaaagcttatcaggttttgaaacagaatccattctggtggacacat
cagcgccacgacggtaaactgtggaatttgaacaactacaggactgatatgatacaggct
ctcggtggtgtagagggtatattagaacatactctattcaaggggacatacttccctacc
tgggaaggtctcttctgggaaaaggcaagtggttttgaggagtctatgaagtacaagaag
ctaaccaatgcacagagatctggtctgaaccagatacctaacagaagatttacactctgg
tggtctcctacaattaacagagctaatgtatatgtaggtttccaggtacagctagatctg
actggtattttcatgcacggcaagatccccacgctgaaaatctcattgatccagatattc
cgggctcatttatggcagaaaatacatgaaagtgttgtcatggatctctgtcaggtattt
gatcaagagttagatgcccttgagatagagacagtacagaaggagaccattcatccacgt
aaatcctacaagatgaacagttcctgtgcagacatactactctttgctgcttacaagtgg
aatgtctccaaaccttcattgcttgcagattcaaaagatgtgatggacaatgccacgaca
cagaagtactggttggatatacagttgagatggggagattacgactcacacgatgtcgag
agatacaccagggccaagttccttgattacacaacagacaatatgagtatctatccgtca
cccactggtgttcttattggcattgaccttgcatataaccttcacagtgcatatggtaac
tggttccctggcgcgaagccactgatccagcaagccatggcaaagatcatgaaagccaat
ccagctttgtacgtgttgagagaaagaatccgtaaaggtttgcagctgtactcctcggag
cccactgagccctacctgagttcacagaactacggggagctgttctctaaccagatcatc
tggtttgtagatgatactaatgtgtacagagttaccattcacaagacatttgaaggtaac
ttgacaaccaaaccaatcaatggagccattttcatcttcaaccctagaactggacaactt
ttcttgaagattattcatacatcagtatgggctggtcagaaacgtcttggacagcttgcc
aaatggaagacagctgaggaagttgctgctttgattagatctctaccagtagaagaacaa
cccaaacagatcattgtcacacgtaaaggcatgttggatcccctcgaggtccatctcctt
gatttcccaaacatcgtgatcaagggcagtgaactccagctacctttccaggcttgcctt
aaggttgagaagtttggggacttgatattgaaggcaacagaaccacagatggtgttgttt
aatttatacgatgattggttgaaaactatctcatcatacactgcattctctcgtctaatc
ttgattttgcgagcattgcatgtgaacaatgatcgtacaaagatcattctgaagccagac
aagacaacaattaccgagccgcatcatatctggccgacactgtcagacgaggagtggatg
aagattgaagtacagctgaaagaacttattcttgctgattatggcaagaaaaacaatgtg
aacgtagcctctctgacacagtctgaaatccgagacattatacttggtatggagatatca
gcaccctcggcccagcgacaacagattgctgagattgagaaacagacaaaagaacagtcc
cagcttaccgctacaacaacaaaaacagttaacaaacatggcgacgagatcattacttca
actacaagtaattacgagactcaaacatacgcttcaaaaactgagtggcgtgttcgagcg
atctccgcaacaaacttacatctacgtacaaatcatatttacgtgtcctctgacgacatt
aaagagacaggatatacgtacattctaccgaaaaatgtgttgaagaagtttattataata
tcagacttgcgtgctcagatctcgggatatttgtacggagttagtccccctgataatccg
caggtgaaggagatcaggtgtattgtgatgccgccacagtggggtacacatcagactgta
catctacccaacattctaccagagcacgagtacttgaaggaaatggagcctctaggatgg
atacacacccagcctaatgagttgccccagctctcccctcaggatatcaccacacatgcc
aagatcatgcaggaaaatctccactgggatggggagaaaacggtcatcattacatgcagt
tttacccctggatcctgctcattgaccgcctataaactgaccccaagtggttacgattgg
ggacgtcagaacacagatacgggtaacaatccaaagggttacctcccctcacattatgaa
cgtgtacagatgttactctcggacaggttcttgggattcttcatggtgcctgcacaaaca
tcgtggaactataacttcatgggtgtacgtcacgatcccaacatgaagtatgagctgatg
ctgtctaacccgaaggagttttaccatgaggtacatagaccctcacatttcctcaacttc
agtcagatggaagagggcgaacaaattggtgccgacagagaagatctgttctcttaa
DBGET
integrated database retrieval system
