Ruditapes philippinarum (Manila clam): 132715829
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Entry
132715829 CDS
T09557
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04140
Autophagy - animal
rphi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
132715829
04148 Efferocytosis
132715829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rphi04131
]
132715829
Membrane trafficking [BR:
rphi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
132715829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
WD40_WDHD1_1st
WD40_CDC20-Fz
zf-RING_Vps41
WD40
Clathrin
WD40_Prp19
Beta-prop_HPS5
WDR55
zf-RING_5
Beta-prop_EML_2
EIF3I
Vps39_1
zf_RING_Vps8
TPR_GEMI5
ANAPC4_WD40
Beta-prop_RIG_2nd
zf-RING_2
PEP5_VPS11_N
PDXDC1-like_cen
Beta-prop_WDR90_POC16_2nd
PROPPIN
zf-UDP
Motif
Other DBs
NCBI-GeneID:
132715829
NCBI-ProteinID:
XP_060554892
LinkDB
All DBs
Position
Unknown
AA seq
866 aa
AA seq
DB search
MATSVDSDQVKEEVKSEDEESETDSDDSEEDAEPRLRYDRVTNDLGQILQKDCASCMAVH
SKFLALGTHWGTIHILDYLGNNIQGKEYQAHTTTVNQISVDDNGDYIASCSDDGKVNIIG
LYSADDNQVVNFDRPVKSVAIDPFFYKSSSKQFVTGDDKLILNERGFLRSHKTRVLHQGE
GAIRQIKWKGELVAWANDFGVKVYDLNSKVRITSIAKDHNHRPDLYQCNLYWQDERRLLI
GWADTVKVCLVKDRVTHDVRDLPPRYVEIVAMFNTRDFMICGIASLEYHVVLLTYDKPPP
AQQQEGNKSLSNRPNLRIVDAFMEYFEEVSNDALSIRGYQHYRCNDYHLGNMCMNENVKE
DNLFYIISPKDVVVARPRDMDDHITWLIRHEDFEEAMNAATLNSKELKRHTFQDIGRQFL
NYLIEQNRFEDAAKLCVKIFGRNKELWEAEAYKFAKMGQLKCLAPFLPQEDPMLSPAIYE
MVLNDFLQTNCKVFLQLVKEWPHTLYNIQAVIKVVIDKLDRDRNNRDLLHALAELHGYER
AFDKALAIYLKLKDRDVFVLIHKHNLFESVSDKIVQLMEFDQEAAVTMLLNNLDKIPVEK
VVPQLEKKPKYLYIYLDKLAMKDQQLIKSYATQMVKLYAEFDRPKLLPFLRGSVQYNLDS
ALKEVKVREFKPELVFLLGRTGDMKTALKIIVDELHDVDQAIEFCKEHNDTELWEDLIQY
SLDKPNFITGLLNNIGTHVDPIILIRRIQTGMEIPELRDSLVKILQDYNLQISLREGCKK
ILVADSFGLMNRLVKTQKKAISVDTSHVCTVCHEKILVTETRHASDVLVFFCSHAAHELC
LNTAMETCPICTTQRRGPGRSAMIRK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgtagactccgaccaagtgaaagaggaagttaaaagtgaagatgaagag
tcagagactgattctgatgattctgaagaggatgctgagccaaggctaagatatgataga
gttacaaatgaccttggtcaaatactgcaaaaagattgtgccagctgtatggcagtacac
tctaaatttcttgcattagggacacactggggtactatacacattcttgattaccttggc
aacaatatacagggaaaggaatatcaagcacatacaacaacagttaatcagataagtgtt
gatgacaatggggactacattgctagctgttctgatgatggaaaggtcaacatcatagga
ctgtactcagctgatgataaccaagtggtcaattttgaccgtcccgtcaaatctgtggct
atcgatcctttcttctataagtcaagtagtaaacaatttgtgactggtgatgacaagctc
attctgaacgagagagggtttttgcggagtcacaagacgcgcgttctacatcaaggggaa
ggtgccatcagacagatcaagtggaaaggagaacttgtagcgtgggctaatgattttggt
gtgaaggtgtatgatttgaactcaaaagtgagaataacatccatagccaaagatcacaac
cataggcctgatctataccagtgtaatctctattggcaagatgaaagaagacttctgatt
ggttgggctgatactgtcaaagtatgtttggtgaaggatagagttacacatgatgtaaga
gatttacctcctagatatgtagaaatcgtggccatgtttaacactcgggattttatgata
tgtggaattgcctcccttgaatatcatgtggttctccttacttatgataaaccgccacca
gcacaacaacaggagggaaacaagagtctgtcaaatcgtccaaatctacggatagtggat
gcttttatggaatactttgaagaggtgtcaaatgatgccctgtcaatcagaggttatcaa
cattacaggtgtaacgattatcatctaggaaatatgtgtatgaatgagaatgtaaaggag
gacaatttattctatattataagtccgaaggatgttgttgttgctagacctagagatatg
gacgatcatatcacatggctcattagacatgaagattttgaggaagctatgaatgctgca
actttaaatagtaaagaattaaagagacatacattccaggacatagggagacagttcttg
aattaccttatagaacagaataggtttgaagatgctgccaaactttgtgtgaagatattt
ggtaggaacaaagaactgtgggaagcagaggcatacaagtttgctaaaatgggccagctt
aagtgtttagccccattcttacctcaagaagatccgatgctgagtcctgcaatatatgag
atggttctgaatgattttctacaaactaactgtaaggtgtttctgcagttggtaaaagag
tggccgcatacactgtacaacatccaggctgttatcaaagtggtgatagataaattagat
agggatagaaacaacagagatctcttacacgctctagctgaattgcatggatatgagaga
gcatttgataaagcattggccatatatttgaaattgaaagacagggatgtttttgtgttg
attcataaacataacttgtttgagtctgtcagtgataaaattgtccagttgatggaattt
gaccaggaagctgctgttactatgctcttaaacaacttagataaaatacctgttgagaaa
gtcgtaccacagctagagaagaaaccaaaatatttgtatatataccttgacaagctagcg
atgaaagaccagcagttgattaagtcatacgctacacagatggtaaagttatatgcagaa
tttgatcgtccaaaacttctccctttcctgcgtggcagtgtgcaatataacctagattct
gccttgaaggaagttaaagtgcgagaatttaaacctgagcttgttttcttgttaggtcgt
acaggagacatgaaaacagcattaaagattattgtggatgaacttcatgatgtggatcag
gcaatagagttttgtaaggagcataacgacacagaattatgggaggatctgatacaatat
tcattggacaaaccaaattttatcaccggtttgttgaacaatattgggacccatgttgac
ccaattattcttatacgaagaatacagactggaatggagatcccagaacttagagattcc
cttgtgaagattttacaagattataatcttcagatttctcttagagaggggtgtaagaaa
atactggtcgctgatagctttggtttgatgaatagactggttaaaacacaaaagaaagca
atatctgtagacactagccatgtctgtacagtttgtcatgaaaagattctagtcacagaa
acccgtcatgccagtgatgtcctagtgttcttctgcagtcatgctgcccatgagctttgc
cttaacactgcaatggaaacttgtccaatatgtacaacacaaaggagaggacctggtaga
agtgctatgattagaaaataa
DBGET
integrated database retrieval system
