Ruditapes philippinarum (Manila clam): 132715862
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Entry
132715862 CDS
T09557
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132715862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132715862
DNA repair and recombination proteins [BR:
rphi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132715862
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
AAA_27
TPR_HPS5_insect
DUF416
Motif
Other DBs
NCBI-GeneID:
132715862
NCBI-ProteinID:
XP_060554940
LinkDB
All DBs
Position
Unknown
AA seq
785 aa
AA seq
DB search
MNFESFVRDLLLVKQYRVEVYKNKGGAKNNEWSLGFKASPGNLTQFEEILFGNTDMSNSV
GVIAVKLSSENGQRMLGVGYADATLRKFQVSEFTDNDQFSNLEALIVQLGPKECVLAPGD
STADTGKLKQVLDRSGVLITERKRSEFTNKDAVQDLNRLLKMKKGEQGNAASLAEVDKQH
AMAALSAIIKYLELLSDESNFGQFTLSTFDLGQYMRLDAAAVRALNLLPSSTEGGNKNQC
LLGLLNRCRTAQGQRLLGHWVKQPLVDKNRIEERLNIVEAFVEDTELRQMLFEDQLRRIP
DFQRLAKKFQRKKASLQDVYRVYQAIDKMPYLLETLEKTDSQHKSLLMDIFSNPLKELLM
DFAKFQEMVEATMDLDQVENHEFVIKADFDEGLTALKEKMDKLEDNIKGQLNKVARDLGL
EPNKVLKLESNAQLGYFFRVTLKEEKVLRNNKNYITIDTKTNGVRFHNKAVRELNTDYLE
AKEEYGEQQKSVVNEVIGIAAGYVEPMLIINDILAQLDVLVSFSQVTTCAPIPYVRPTVL
EKGSGIIKLKETRHPCLEMQDDIAFIPNDIQFEKDKQMFHIITGPNMGGKSTYIRSIGVT
VLMCQLGCFVPCNEAEVTIVDSILARVGAGDSQLKGVSTFMAEMLETASILRSATEDSLI
IIDELGRGTSTYDGFGLAWAISENIATQLKSYCLFATHFHELTALADKVPTVNNLHVTAL
TSNDTLTLLYRVKPGVCDQSFGIHVAELAHFPKHVIQFAKEKACELEDYQCISLSGTDLE
GEDEP
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgagtcttttgtacgagacctacttctggtgaaacagtacagagtggaggtg
tacaagaacaagggtggagctaaaaataatgagtggagtcttggatttaaggcatctcca
ggcaacctgacacagtttgaggagatactgtttggaaacactgacatgtcaaactctgtt
ggggttattgctgtaaaattatcatccgagaatgggcaaaggatgctaggagttggttat
gcagatgctacattgaggaaatttcaagttagtgaattcacggataatgaccagttttca
aatctagaggcattgattgtacaactaggaccgaaggagtgtgtcctggcccccggggat
tccacagcggatactggtaaacttaaacaagtccttgacaggagtggtgttcttattaca
gagaggaagagaagtgaatttacaaacaaagatgctgtccaagatctgaatcgtctgctg
aaaatgaagaaaggtgaacaaggaaatgctgcatctttagctgaagtggacaaacagcat
gccatggcagccttgtcagcaattatcaaataccttgaacttctatcggatgagagtaat
tttggtcagtttacattgtcgacctttgaccttggtcagtatatgagacttgatgctgcc
gctgttcgagccctgaatctactccctagctctactgaaggaggcaacaagaatcagtgt
ctacttggtcttctaaatagatgtcgcactgcacaaggtcaaaggttactaggtcactgg
gtcaaacaaccattggtggataaaaatagaatagaggagaggctaaacattgttgaggca
tttgttgaagatacagagcttagacagatgttgtttgaagatcaattaagaaggatacca
gatttccagagattagctaaaaaattccagaggaaaaaagcttcattacaggatgtgtac
agagtttatcaggcaatagataagatgccatatctactggaaacattagagaaaactgac
agtcagcataaatcactactcatggacattttcagcaatcctcttaaggagctgttaatg
gactttgccaagtttcaagagatggttgaagccaccatggatcttgatcaagttgagaac
cacgagtttgtcataaaagccgactttgatgagggtctgacagcgttaaaagaaaaaatg
gacaagttagaggacaatattaaaggtcaacttaacaaggttgccagggatcttggttta
gagcccaacaaagtgttgaagttagaaagcaatgctcagttaggatatttctttagagtg
accttaaaggaggagaaagttttaagaaacaacaagaattatatcaccatagatacaaag
accaatggtgtgaggttccataacaaggcagtgagagaacttaatacagattaccttgag
gcgaaggaagagtacggtgaacaacagaaaagtgtggtgaacgaggttattggaattgca
gctggatatgtagaacctatgttgataattaatgacatattggcacagttagatgtattg
gtgagtttctcccaggtgacaacatgtgctccaataccgtatgttagacctactgtactg
gaaaaaggtagtggtattataaaattgaaggaaacgagacacccatgtctagagatgcaa
gatgatatagcatttatacctaatgatatacagtttgaaaaagataaacagatgtttcac
attataactggaccgaacatgggagggaaatctacatacattcgctcaattggtgttact
gtgctgatgtgtcaactgggatgttttgtgccatgtaacgaggctgaggtcactatagtt
gacagtatacttgcaagagtgggtgctggggacagtcaactgaagggtgtgtccacattt
atggcagaaatgttagaaacagcttctatactgaggtcggcaacagaggattcattgatc
atcatagatgagttagggagaggcacatcaacatatgatggttttgggctggcatgggct
atctcagaaaatatagcgacacagttgaagtcttactgtctgtttgccacccacttccat
gagttaactgcccttgctgataaagtgcccactgtgaataatctacatgtaactgccttg
actagtaacgatacattaacgttgctgtacagagttaaaccaggtgtgtgtgaccagagt
tttggaatccatgtggcagaattggcacattttcctaaacatgttattcagtttgccaag
gagaaagcctgtgagttagaagattatcagtgcatcagtctgtcaggtacagaccttgaa
ggagaggatgaacca
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