Ruditapes philippinarum (Manila clam): 132715873
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Entry
132715873 CDS
T09557
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132715873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rphi03041
]
132715873
Spliceosome [BR:
rphi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132715873
Complex C
U5 SnRNP specific factors
132715873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
DUF536
Motif
Other DBs
NCBI-GeneID:
132715873
NCBI-ProteinID:
XP_060554949
LinkDB
All DBs
Position
Unknown
AA seq
2367 aa
AA seq
DB search
MAYNYVIGPGGQPIILGQVQMIQPLMQVPGAPAPMQQMNTGVPPQQPPVQQTKVPDYMSE
EKLQEKTRKWQQLQSKRYSEKRKFGFVDVQKGDFPPEHVRKIIHDHGDMTNRKFRHDKRV
YLGALKYMPHAVLKLLENMPMPWEQIRDVKVLYHTTGAITFVNEIPWVIEPVYIAQWGTM
WIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAGNILDVEPLEAIQIELDPEEDKCVADWF
YDHKPLVDTKSVNGSTYRKWNLSLPVMSVLYRLGNQLLTDLVDNNYFYLFDLKSFFTAKA
LNMAIPGGPKFEPLVKDKEMQDEDWNEFNDINKIIIRQPVRTEYRIAFPYLYNNLPFQVH
LSWYHWPNIVFIKTEDPDLPAFYFDPLINPISHRHTNKSTDPLPDDDEEFELPEYVQPFM
HDTPLYTDNTANGIALLWAPRPFNTRSGRTRRAIDVPLVKSWYREHPPAGMPVKVRVSYQ
KLLKYYVLNALKHRPPKSQKKRYLFRSFKATKFFETTQLDWVEVGLQVCRQGYNMLNLLI
HRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSFVQYRLGN
VDAFQLADGLQYVFSHVGQLTGMYRYKYKLMRQIRMCKDLKHVIYYRFNTGPVGKGPGCG
IWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHYDLELRAA
VMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVKAKAD
WWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITPEEGVA
IYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIE
QAYDNPHEALSRIKRHLLTQRAFKETGIEFMDLYSHLIPVFDVEPLEKITDAYLDQYLWY
EADKRRLFPPWIKPADLEPPPTLVYKWCQGINNLQDVWDTAEGECNVMMETKFEKMYEKI
DLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFITQYYGLVL
DLLVLGLMRASEMAGPPQMPNAFLQFQDVNTEAAHPIRLYSRYVDRIHIYFRFSAEEARD
LIQRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSVTTI
EWDGSFVSVYSKDNPNLLFNMCGFECRILPKCRTTHEEFTHRDGVWNLQNEVTKERTAQC
FLRVDDESMNKFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLL
VKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDV
GITHFRSGMSHDEDQLIPNLYRYIMPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDL
EDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKAYQVLKQNPFWWTHQRHDGKLWNLN
NYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQ
IPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHES
VVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKPSLLADS
KDVMDNATTQKYWLDIQLRWGDYDSHDVERYTRAKFLDYTTDNMSIYPSPTGVLIGIDLA
YNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNY
GELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWA
GQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSE
LQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNND
RTKIILKPDKTTITEPHHIWPTLSDEEWMKIEVQLKELILADYGKKNNVNVASLTQSEIR
DIILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTKTVNKHGDEIITSTTSNYETQTYA
SKTEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFIIISDLRAQISGYL
YGVSPPDNPQVKEIRCIVMPPQWGTHQTVHLPNILPEHEYLKEMEPLGWIHTQPNELPQL
SPQDITTHAKIMQENLHWDGEKTVIITCSFTPGSCSLTAYKLTPSGYDWGRQNTDTGNNP
KGYLPSHYERVQMLLSDRFLGFFMVPAQTSWNYNFMGVRHDPNMKYELMLSNPKEFYHEV
HRPSHFLNFSQMEEGEQIGADREDLFS
NT seq
7104 nt
NT seq
+upstream
nt +downstream
nt
atggcttacaactatgtgatagggccggggggacagcccatcattctcgggcaggtacag
atgatacagcccttgatgcaggtgcccggggctcctgcccccatgcaacagatgaacact
ggtgttcctccccaacaaccacctgttcagcagactaaagtaccagattatatgtctgaa
gaaaagctgcaagaaaaaaccagaaaatggcagcagttgcagtccaaaagatacagtgaa
aagaggaaatttgggtttgtggatgtacaaaaaggagattttcctccggagcatgtgaga
aaaattattcacgaccacggagacatgaccaacagaaaattcagacatgataaacgtgta
tatctaggtgcattgaagtatatgccccatgcagtgttaaagctgttagaaaatatgccg
atgccatgggagcagattcgtgatgttaaagtactctaccataccactggagctataaca
tttgtcaatgaaattccatgggtcattgaaccggtctacattgctcagtggggaacaatg
tggattatgatgcgtcgagaaaaacgtgacagacgtcacttcaagcgtatgcgtttccct
ccatttgatgacgaggagcctccccttgattatgcaggaaatatcctagatgttgagccc
ctcgaggctatacagattgaactggaccccgaggaggataaatgtgtcgcagattggttc
tatgatcataaaccacttgttgatacaaagtcggttaatggtagcacatacagaaagtgg
aacttgtcattaccggtcatgtccgtgttgtatcgtcttggcaaccagctgctcacagat
cttgttgacaacaactacttctacctgtttgatttaaagtcattcttcacagcaaaggca
ttgaatatggccatcccaggtggtccaaagttcgagcctctggttaaagacaaggaaatg
caggatgaagactggaatgagtttaatgatatcaacaagatcatcattcgtcagccagtg
aggaccgagtacaggatagctttcccttacctttataacaacctgccattccaggttcat
ctgtcatggtatcattggcccaatattgtatttatcaagacggaggatcctgatttacct
gccttctacttcgaccctctcatcaaccccatatctcacagacacactaacaagagcaca
gatcccctaccagatgatgatgaagagtttgagctgccggaatacgttcagccgttcatg
catgacacacctttatacaccgataacacagctaatggcattgccttactctgggctcct
agacccttcaacactagatccggccgcacaaggagagcaattgatgtgccactcgtgaag
tcctggtaccgggagcatccaccagctggcatgccagtaaaggttcgagtctcataccag
aaacttctaaagtattatgtactgaacgccttaaaacacagaccgcccaagtcacagaag
aagaggtatctgttcagatcatttaaagctaccaagtttttcgagacaacgcaattagac
tgggtggaggtaggactacaagtatgtcgtcaaggttacaacatgttgaacctcctcatt
catcgtaaaaatctaaactaccttcatctggattacaactttaatcttaaacctgtgaag
acattgacaacaaaagaaagaaagaaatctcggttcggaaatgctttccatctgtgtcgt
gaagtgcttaggttgaccaagcttgtggttgacagctttgtacagtacagattaggaaat
gttgatgctttccagttagcagatggtctacagtatgtgttctcccatgttggtcagctg
actggaatgtacagatataaatacaagttgatgaggcagataagaatgtgtaaagatctc
aaacatgttatatactacagatttaatacaggtcctgttggtaaaggtccaggttgtggt
atatgggctccagggtggcgtgtatggttgtttttcatgcgaggtatcacacccttacta
gagagatggctgggtaacttgctgtccaggcagtttgaaggtcgtcactctaaaggggtt
gctaagacggtaactaagcaacgtgtggagtcgcattatgatctagaattgagggcagca
gtgatgcatgacattttggacatgatgcctgaaggtattaaacagaacaaggcaagaacc
atcttacagcatctcagtgaggcgtggaggtgttggaaggctaacattccatggaaggta
ccaggattacccatccctatagagaatatgatcttgagatatgtgaaagccaaggcagat
tggtggacaaacacagctcattacaacagggagagaatcaggaggggtgcaacagtagat
aagactgtatgtaagaagaatctcggcagactgacacgattatatctgaaggcagaacag
gaaaggcagcataattatctcaaggatggtccatacattacaccagaggagggtgtggct
atctacacaacaactgtccattggctggagagtaggagattttctcctatcccttttcct
ccactgtcatacaagcacgataccaaacttcttatcttagctttagaaaggttgaaagaa
gcatacagtgtgaaaagcaggttaaaccagtcacagagagaagagttgggtctcatagag
caagcctatgacaatcctcacgaggccttgtccagaattaaacgtcatcttctaacacag
agagctttcaaagagactggtattgagtttatggatctgtacagtcacctgataccggtg
tttgatgtggaacccctcgagaagataacagacgcgtacctggaccagtacctgtggtac
gaggctgacaagagacggttgtttcctccatggatcaaaccagccgatctagaaccacct
cccactcttgtatacaaatggtgtcaaggcatcaacaacttgcaggatgtatgggacaca
gcagaaggagagtgtaacgtgatgatggagacaaagtttgagaagatgtacgagaagata
gatttgacactactcaacagattgttacgtttgatcgtagaccataatattgctgattac
atgacagccaaaaacaatgttgttatcaactataaggatatgaaccacacaaattcatat
ggtattattcggggtctacagtttgcttcgttcatcacccagtattacggactggtactc
gacttgctggtactcggcttgatgcgagcctctgagatggctggtccccctcagatgccc
aacgccttcctgcagttccaggatgttaatacagaggcggcccatccaattaggctgtac
tcaagatatgtggataggatccatatatatttcagattttcagctgaggaagctcgtgat
ctgatacagcgttatttaacagaacatcctgaccctaacaatgagaacattgtgggctac
aacaacaagaaatgctggccgagagattctagaatgaggctaatgaaacatgatgtcaac
ttaggtagggcagtgttttgggatatcaagaacagattacctcgatctgtgacaactata
gaatgggacggcagttttgtttctgtatacagtaaagacaatcccaacttattatttaac
atgtgtggatttgagtgtaggattttacccaagtgtagaacaacacatgaagagtttaca
cacagggatggagtgtggaatttacagaatgaggtaactaaagagcgtacagcgcagtgt
ttcctgagggtagatgatgagtctatgaacaagttccataatcgtgtcagacagatcctg
atggcatccggatccacaacatttacaaagattgtaaacaagtggaacacagctttgatt
ggattaatgacctactttagagaggctgtagtcaacacacaggaactgttggacctacta
gtaaagtgtgaaaacaagattcaaacccgtattaagatcggtctcaactctaaaatgccc
agcaggttccctcctgtagtcttctatacaccaaaggagttgggaggtttgggaatgttg
agtatgggacatgttttgatacctcagtcagatctgagatggtccaagcagacagatgtg
ggtatcacacattttaggtcgggtatgtctcatgacgaggaccagcttatccctaacttg
tacagatatattatgccatgggaaagcgagttcatagattcccagagagtatgggcggag
tatgctttgaagagacaggaggccaacgcccagaaccgtcgtctaaccctcgaggacttg
gaggacagctgggaccgtggtatacctaggattaacaccctcttccagaaggacagacac
accctcgcctatgacaagggctggagagtgagaaccgagttcaaagcttatcaggttttg
aagcagaatccattctggtggacacatcaacgtcacgacggtaaactgtggaatttgaac
aactacaggacagatatgatacaagctctcggtggtgttgagggtatattagaacatact
ctgttcaaggggacatacttccctacatgggaaggtctcttctgggaaaaggcaagcggt
tttgaggagtctatgaagtacaagaagctaaccaatgcacagagatccggtctgaaccag
attcctaacagaagatttacactctggtggtctcctacaattaacagagctaatgtatat
gtaggtttccaggtacagctagatctgactggtattttcatgcacggcaagatccccacg
ctgaaaatctcattgatccagatattcagggctcatttgtggcagaaaatacacgagagt
gttgtcatggatctttgtcaggtatttgatcaagagttagatgcccttgagatagagacc
gtacagaaggagaccattcatccacgtaaatcctacaagatgaacagttcctgtgcagac
atactgctctttgctgcttacaagtggaatgtctccaaaccttcattgctcgcagactca
aaagatgtgatggacaatgcgacgacacagaagtactggttggatatacagttgagatgg
ggagattacgactcgcacgatgtcgagagatacaccagggccaagttccttgattacaca
acagacaatatgagtatctatccatcacccactggtgttcttatcggcattgaccttgca
tataaccttcacagtgcatatggtaactggtttcctggggcgaagccactgatccagcaa
gccatggcaaagatcatgaaagccaatccagctttgtatgtgttgagagaaagaatccgt
aaaggtttgcagctgtactcctcggagcccactgagccgtacctgagttcacagaactac
ggggagctgttctctaaccagatcatctggtttgtagatgatactaatgtgtacagagtt
accattcacaagacatttgaaggtaacttgacaaccaaaccaatcaatggagccattttc
atcttcaaccctagaactggacaacttttcttgaagattattcacacatcagtatgggct
ggtcagaaacgtcttggacagcttgccaaatggaagacagctgaggaagttgctgctttg
attagatctctaccagtagaagaacaacccaaacagatcattgtcacacgtaaaggcatg
ttggatcccctcgaggtccatctccttgacttcccaaacatcgtgatcaagggcagtgaa
ctccagctacctttccaggcttgccttaaggttgagaagtttggggacttgatattgaag
gcaacagaaccacagatggtgctgtttaacttgtacgatgattggttgaaaactatctca
tcatacactgcattctctcgtctaatcttgattttgcgagcgttgcatgtgaacaatgat
cgtacaaagatcattctgaagccagacaagacgacaattacggagccgcatcatatctgg
ccgacactgtcggacgaggagtggatgaagattgaagtacagctgaaagaacttattctt
gctgattatggcaagaaaaacaatgtgaacgtagcctctctgacacagtctgaaatccga
gacatcatacttggtatggagatctccgcaccctcggcccagcgacaacagattgctgag
attgagaaacagacaaaagaacagtcccagcttacggccacaacaacaaaaacagtaaac
aaacatggagacgagatcattacttcgacaacaagtaattacgagactcaaacttatgcg
tcgaaaactgagtggcgtgttcgagcgatctccgcaacaaacttacatctacgtacaaat
catatttacgtgtcttctgatgacatcaaagagacaggatatacgtacattctaccgaaa
aatgtgttgaagaagtttattataatatcagacttgcgtgctcagatctcgggatatttg
tacggagttagtccccctgataatccgcaggtgaaggagatcaggtgtattgtgatgccg
ccacagtggggtacacatcagactgtacatctacctaacattctaccagagcacgagtac
ttgaaggaaatggagcctctaggatggatacacacccagcctaatgagttgccccagctc
tccccccaggatatcaccacacatgccaagatcatgcaggaaaatctccactgggacgga
gagaaaaccgtcatcattacatgcagttttacccctggctcttgctcgctgaccgcctat
aagctgaccccaagtggttatgattggggacgtcagaacacagatacgggtaacaatcca
aagggttacctcccctcacattatgaacgggtacagatgttactctcggacaggttcttg
ggattcttcatggtgcctgcacaaacatcctggaactataacttcatgggtgtacgtcac
gatcccaacatgaagtatgagctgatgctgtctaacccaaaggagttttatcacgaggta
catagaccctcacatttcctcaacttcagtcagatggaagagggcgaacaaataggtgcc
gacagagaagatctgttctcttaa
DBGET
integrated database retrieval system
