KEGG   Ruditapes philippinarum (Manila clam): 132715951
Entry
132715951         CDS       T09557                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03030  DNA replication
rphi03410  Base excision repair
rphi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132715951
   03410 Base excision repair
    132715951
   03420 Nucleotide excision repair
    132715951
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rphi03032]
    132715951
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132715951
Enzymes [BR:rphi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     132715951
DNA replication proteins [BR:rphi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    132715951
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      132715951
SSDB
Motif
Pfam: DUF1744 POL2_thumb zf-DPOE zf_DPOE_2 DNA_pol_B
Other DBs
NCBI-GeneID: 132715951
NCBI-ProteinID: XP_060555053
LinkDB
Position
Unknown
AA seq 1529 aa
AFHELSKLEQAEIEKKRLAEYCRKAYKKTKATKMEERTATICQRENSFYVDTVRAFRDRR
YEFKGLVKVWKKKLSEAQDSGDASEIKKANGMVVLYDSLQLAHKCILNSFYGYVMRKGAR
WYSMEMAGIVCYTGAHIITKAREIVEQIGRPLELDTDGIWCVLPATFPENYVVKTTNPKK
PKVTISYPGAMLNVMVKDFFTNDQYQELVDADTLEYKVRSENSIFFEVDGPYLAMILPAS
KEEGKKLKKRYAVFNFDGSLAELKGFEVKRRGELELIKIFQSSVFEAFLKGKTLDECYAA
VAKVADYWLDVLYSKAQNMPDSELFELISEKRSMSRKLEDYGAQKSTSISTAKRLAEFLG
DQMVKDAGLSCKFVISKKPEGAPVTERAVPLTIFEAEPGVKKHYLRKWLKAPGITSFDIR
EIIDWEYYIERLGGCVMKIITIPAALQNVCNPVPRIAHPDWLQKKLLERNDVFKQKKISE
IFAAAPKPVQQDEENVFKKPNNVADIEDIGSSNNTGSKVAVSNKRRRSSNEMSQSQDDSQ
TDSSQSWRDVLGPPPPIGTTKEERRVWLEFHKKKWKFQVEERRERKRRRIDFGDTSSSFA
PVTSSHRGIGGFLRRTARSVMDMPWQIVQLIETGHPGQFKLWALIGSDLHAMKLNVPRMF
YVNQKSPKVGEGHMWKKVIKTLPRSHPVMNLYEYSVPEDVYQEHINEISADLSSPDIEGV
YETQVPLLFRALVKLGCVTMVNRDFAKFMSGREIDTFELEHLEFRTLAQFSYLEPSSIKH
LYLYHHVCGSKMLYGLFFPMSKKGTILVVDTVRSDQMPNLNTMFNTERNAKVLKGVDETM
LPESGHKLEYKLEKNVSQVFRTIQRMLSAYKDEKRGPTYIAVQSVTDFSHLIVDMPGLGE
FPLVPLHIKDSETMYNVLDWQRVGCRRMLQHYMNVDVILKAMIEQCRYLHIPVGNFPKDI
TMFGCDVFFARHLNKHNHILWSSPTERPDLGGKEADDNRIGIEVENLTTQINNPAAYSTV
CVELDIGSLAVNTIIELYLFYRILKSMVQSWVRDVTIHSNVFADNQIIHFYRWLRSPSAM
LYDPALRRTLHNMMKKVFMQLMGEFKRLGSNIVYANFNRVILCTKKRRLLDALAYVEYIT
NSIKTKELFHLIEMSYEQCWEYLMWLDPANYGGIKGSLPSEAEVEQKAPEMVEEDQGDSD
EEERVIENEELNQSDGENEPEIEMNWNIMQFLPEDGACQTNFNMIIAGYILSVYSNLQEE
QQRLTPGNTPIGRRRNNSTPALLDATTTPSAVSFAQNLIQGELAQQMFSLTQKIDKKLSG
NRGKNNISELFPRPPGSYLPLNNPALEFVKYICKVLSLDSNITIQVAKLQRDLLKLIGVG
EFSPEALFKDPCLSYVLPEVICKTCNHIRDLDLCRDPYLSQSSGCTVWSCIQCKSEYNLF
EIEQSLIDSLNRHSMANVLQDLQCVKCHQIKDSNMRTYCTCAGEYSNTLTADDLGQQLKT
FRGIASHYNMVLLEETANWILKLNPQICD
NT seq 4592 nt   +upstreamnt  +downstreamnt
gagcttttcatgaactatctaagctggaacaggcagaaattgagaaaaaaagattagcag
aatattgtcggaaagcatacaagaaaactaaggctacaaagatggaagagagaacagcaa
ccatttgtcagagagaaaattctttctatgttgatactgtcagggcattcagagatagaa
gatacgagtttaaaggcctagtgaaggtgtggaaaaagaagttgtcggaagcccaagatt
caggggatgctagtgagattaagaaagctaatggaatggtagtgttatacgactctcttc
agctggcacataagtgcattcttaattccttctatggatatgtcatgaggaaaggggcac
gttggtacagtatggagatggctggaattgtatgttacactggagctcatatcatcacta
aagctagggaaattgttgaacaaattggtcgaccattggagttggatactgacggtattt
ggtgtgtattacctgctacatttccggaaaattatgttgtgaaaactacaaaccctaaaa
aaccaaaagtgactatttcttatcctggagcgatgttgaatgtgatggtaaaggatttct
tcactaatgatcagtatcaagagcttgtggatgctgacacactagagtataaagtgcgga
gtgagaactctattttctttgaagtagatggaccataccttgcaatgatactgccggcat
ccaaggaagaaggaaagaaattaaagaaaagatatgctgtatttaattttgatggatcgc
tagcagagcttaaaggatttgaagtgaagcgacgaggagagttagaattaatcaagattt
ttcagtcctcggtgtttgaagcttttctgaaggggaaaacactggatgagtgttatgctg
cagtggccaaggttgcagattactggcttgatgtattgtatagtaaggcacaaaatatgc
cagattctgaattgtttgaacttatatcagagaagagaagtatgtctcgtaaacttgaag
attatggtgctcagaaatctacatcaattagtacagcaaaaagacttgcagagtttttgg
gtgatcaaatggtaaaggatgctggtcttagttgtaaatttgttatttccaagaaaccag
agggagctccagtcactgaaagagctgttcccttaacaatatttgaggcagagccaggag
ttaaaaaacattatttgaggaagtggctgaaagcaccaggaatcaccagctttgatatca
gagagatcattgactgggagtattatatagaaagacttggaggatgtgtgatgaagatta
taactattcctgcagctttacaaaatgtgtgtaatccagtacctcgtattgcccacccag
actggttacagaaaaaactgttggaaagaaacgatgttttcaagcagaaaaagatcagtg
aaatatttgctgcagctcctaagccagttcaacaggatgaagagaatgtatttaagaaac
caaacaatgttgctgatatagaagacattgggtccagtaacaatacaggatctaaagttg
ctgtatcaaacaaacgtagacggtcgagtaatgagatgtcacaaagtcaagatgattctc
aaacagatagtagtcagtcatggcgtgatgttctaggtccaccacctccaattggaacta
ctaaagaagagaggagagtctggcttgagtttcataaaaagaaatggaagtttcaagttg
aagagagacgagaacgcaagagaaggcgtatagattttggtgatacttcttcttcttttg
ccccagtcacttctagtcacagaggtataggaggtttcttaagaagaactgctcgcagtg
ttatggatatgccatggcaaattgtacagctgatagaaacaggtcatccaggacagttca
aactttgggctttaattggaagtgatctgcatgccatgaagctgaacgttcctcgaatgt
tctatgttaatcagaaatcaccgaaagttggagaaggccatatgtggaaaaaggtaataa
aaacattgccaagatcccatcctgtgatgaacttgtatgagtattctgtacccgaagatg
tgtaccaggaacatataaatgaaataagtgctgatctatcatcccccgatatagagggag
tttatgaaacacaagtgcctctcttgtttagagcacttgttaaacttggctgtgtgacaa
tggtgaatcgagattttgcaaaatttatgtctgggagggagatagatacatttgagttgg
agcatttagaatttcggacattggctcagttctcatacctggaaccatcatcaattaagc
acctttatctatatcatcatgtatgtggttcaaaaatgctgtacgggttatttttcccaa
tgtcgaagaaaggtactatattggtagtggacactgtccgaagtgatcagatgcctaact
taaacacaatgtttaatacagagagaaatgctaaagtattgaaaggtgtggacgagacaa
tgctgccagagagcgggcataagctagaatataagttggagaagaatgtaagccaagtgt
ttagaactatacagagaatgttgtcagcatataaagatgagaaaagaggacctacttata
tagcagttcaatcagtaacagatttttctcatcttattgttgacatgccaggcttgggag
aatttcctcttgtacctttacatattaaagatagtgagactatgtacaatgtattagact
ggcaaagagttggctgtcgtagaatgttacaacactatatgaatgttgatgttatcctga
aggctatgatagaacagtgtcggtacctacatattcctgtaggaaacttccccaaggaca
tcacaatgtttggttgtgatgtattctttgcaagacatttaaataagcataaccacatac
tatggtcatcacctacagaacgaccagatcttggaggtaaggaggcagatgataacagaa
taggtatagaggtagaaaatctcaccacacagatcaacaaccctgctgcctattccactg
tttgtgtggaactagatattggaagcttagctgtcaacactattatagagttatacttat
tctacaggatattaaagagtatggtacagagctgggtccgtgatgtaacaatacactcta
atgtgtttgctgataatcagattatacatttctacagatggcttcgtagtccatcggcca
tgctgtatgaccctgctttgagaaggaccttacacaatatgatgaaaaaagtgttcatgc
agttgatgggtgaattcaagaggcttgggtcaaacattgtgtatgccaacttcaaccgtg
taattctctgtacaaagaagagacgactgttggatgccctagcttatgtagagtatatca
caaacagtataaagacgaaggaactgtttcacttgatagaaatgtcatatgagcagtgct
gggaataccttatgtggctagaccctgctaactatggaggcattaaaggtagtctgccgt
ccgaagcagaggtggagcagaaggcaccggaaatggtggaggaagatcagggcgacagtg
atgaggaagaacgtgttatagagaatgaagagttaaatcagtctgacggtgagaatgaac
cagaaatagaaatgaattggaatatcatgcagttccttccggaagatggggcatgccaga
caaattttaatatgataatagctggctatatcctgtcagtgtacagcaatctacaggagg
aacaacagcgtttgacaccaggcaacacaccaattggtcgtcgccgtaacaacagtactc
cagcattactggatgcaacaactacaccatcagctgttagctttgctcaaaatcttatac
agggggaactagctcaacaaatgttttcattaacacaaaagatagacaagaaattgagtg
gtaatcgtggtaagaacaatatatcggagttgtttccaagaccaccgggatcatatctac
cattgaacaacccagcattggagtttgtaaaatatatttgcaaggtgttgtcattggaca
gtaatattacaatacaagtggccaaattgcagcgagatctgctcaagttgattggtgtgg
gagagttctcaccagaagctttgttcaaagatccatgtctatcatatgttctaccagaag
ttatatgtaagacatgcaatcatattcgagaccttgatctctgcagagatccctatctta
gtcagtcatcaggatgcacagtgtggtcctgtatacaatgtaagtcggagtataatctgt
ttgagatagaacagtctctcatagattccttaaacagacactctatggctaacgtactac
aagacctacagtgtgtcaagtgtcatcagattaaggacagcaacatgaggacttactgta
catgtgcgggagagtacagtaataccttgacagcagacgaccttggccaacagctgaaaa
catttagaggaatagcaagtcattataacatggttttactagaagagacagccaactgga
tattgaagttgaatccacagatctgtgattga

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