Ruditapes philippinarum (Manila clam): 132716054
Help
Entry
132716054 CDS
T09557
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132716054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132716054
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132716054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR41
Tricorn_2nd
LED_rpt
Beta-prop_RIG_1st
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
132716054
NCBI-ProteinID:
XP_060555186
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MEGGGVVVPNQSPDQGFFHMPKLQVPTYQKPRVFVPLNYPPRPPLDGNASTSDPKQRPVA
GPPVMPNATQLSGTTVDGMFDGKRIRKTMVRKTVDYNTSVVKYLENRVWQRDGRDARAIQ
PDALYQLEVTPPCDMQQKPMNCLTSKFMRQSTNKFRCPIFCISWTPEGRRLVTGASSGEF
TLWNGLTFSFETILQAHETSVRAMVWSHNDQWMLTADHAGFIKYWQSNMNNVKMYQGHKE
PIRSISFCPTDSKFATCSDDGTVRVWDFLRCYEEKILRGHGADVKCVDWHPQKSLIASGS
KDNQVPIKLWDPKSGQSLATLHAHKFTVMDIKWNQNGNWLLTAARDHLMKLFDIRNLKEE
LQVFKGHKKEATAVAWHPINEQMFASGGSDGAIMFWNAGTEKEVGAIEEAHEAIIWDLAW
HPLGHILTSASNDHSTKFWTRNRPGDAMRDKYNLNIMAYGPDGEIIDIDADVPLGENKSL
LPGMGLEFGLPPEPEIKPEPVEEELPSIPGLDWSSDAQYFKEQQAKIEDRQPRKKAPYSR
PIPKSFEQAWITNQQPGTLIKDVEGKMKRGRIQSLLTLDLPAKPRKEEFDDRGNRLIDPN
LDQSNTEGFNPLPDDHNPYLDDADDQFPDDQDFRGDQDFRSDQDFRSDQDFREDQDMRDD
QDFRGDMDFRQAEGGGGYNGPGPVGSFGSQGGGPKGRDGGRRGGGGPRQGFHGDRSFGHE
DMDHDNYDRDYNSGPNNRPPDGGGQQRQFGQKNPPSLMDLSFNSNESSDLNLKDHSPGPK
GRGREGRGRDRHGERGGRGGQDGFRNNRGRGGSNNNRFEDRGGRGNWNEDGDGSFSENND
SFNDSQGSTNSGGYRGGSKPRGGRGNYRGGERRGGRGGQRGNYRGGGDNRGGGRGRGRGR
R
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgggggagttgttgttccaaatcagtcccctgatcaaggcttcttccacatg
ccaaagcttcaggttccaacatatcagaagccaagagtatttgttcctttaaattaccct
ccacgtcctccacttgatggaaatgcaagtacaagtgatccaaagcagcggccagtggct
ggtccacctgttatgccgaacgcaacacagttgtctggcacaactgttgatggaatgttt
gatgggaaacggatacgcaaaacaatggtccgaaaaacagttgattacaatacatctgtt
gtcaaatatttagagaatcgtgtgtggcagcgagatgggagggatgctagagctatacag
cctgatgcattatatcagttagaggtgacgccaccatgtgacatgcaacagaagccgatg
aactgtctcacttcaaagtttatgcggcaatcaacaaacaagttcagatgtcctatattc
tgtatatcttggactccagaaggtagaagattggtgactggcgcatcaagtggcgaattt
acattgtggaatggtctcacattcagctttgaaactattttacaggctcatgaaacatcg
gtgcgggcaatggtgtggagtcacaatgaccagtggatgttgacggcagatcatgcaggc
ttcatcaagtactggcagtccaacatgaataatgtgaaaatgtaccagggacataaagaa
cctatacggtccatcagtttttgtccaactgattccaagtttgccacatgttctgacgat
ggcactgtgagagtttgggactttttacgatgttatgaggagaaaatattaagaggtcat
ggtgccgatgtgaagtgcgtggactggcatccacagaagtcattgatagcatctggaagt
aaagataaccaagtaccaatcaaactctgggatccaaagtcaggacaaagtttagctaca
ttacatgctcataaattcactgtgatggacataaagtggaatcagaatggtaactggtta
ttaacggcagctagagatcatcttatgaagttatttgatattagaaatctcaaagaagaa
cttcaggtgtttaaaggtcacaagaaggaagctacagctgtggcatggcatccaatcaat
gagcagatgtttgccagtggaggatcggacggtgcaatcatgttctggaatgctgggaca
gagaaagaggtaggagctattgaggaagcacatgaagcaatcatctgggacttggcctgg
cacccacttggtcatatactcacatctgcctctaacgatcattctacgaaattttggaca
cgtaatcgaccaggtgatgctatgagagataaatacaacctgaacataatggcatatggt
cctgatggggagattattgatatagatgctgatgtaccactgggggaaaacaaaagttta
ctgccaggaatgggactagaatttggactacctcctgaaccagagataaaacctgaacca
gtggaggaggaattaccatctatccctggtctagactggtcctcggatgctcagtacttt
aaagaacaacaagccaaaatagaggacaggcagcctaggaagaaagcaccttattctaga
cctatcccgaaaagttttgaacaggcttggatcaccaaccagcagcctggaacactcatt
aaagatgttgaaggtaaaatgaagagaggtagaatccagtcattgcttacactagacctg
cctgctaaacctagaaaagaagaatttgatgatagaggaaataggctcatagaccctaat
ctagatcaatcaaatacagagggatttaatccgttaccagacgatcataatccttatctt
gatgatgcagacgatcagtttcccgatgatcaggatttccgtggtgaccaggatttccgc
agcgaccaggatttccgcagtgatcaagatttccgagaagatcaggatatgagggatgac
caggacttccgtggtgatatggacttcagacaggctgaagggggtgggggttataacggt
cctggtcctgtgggatcatttgggtctcaaggtggagggcctaagggtagagatggaggt
agaagagggggtggtggtccgaggcagggcttccatggggacagaagttttggacatgaa
gatatggatcatgataactatgatcgtgattataattccgggccaaataaccgaccacct
gatggtggaggacaacagagacagttcgggcagaaaaatcccccaagcttaatggatctt
agttttaattcaaatgaatcctcagacttaaatttgaaggatcacagtcctggaccaaaa
ggtcggggacgagaaggccgaggacgtgatagacatggggaaagaggtggtagagggggt
caggatggtttcagaaacaacagggggaggggaggtagtaataataatagatttgaggat
agaggtggacgaggaaactggaatgaagatggagatggtagttttagtgaaaataatgac
agttttaatgattcacagggcagtaccaacagtggtggttatagaggtggcagcaaacct
agaggtggcagaggaaactatagaggtggtgaaaggagaggtggtaggggtggacaaagg
ggtaactacaggggtggcggtgacaatagaggtgggggaaggggacgagggcggggaagg
cgttga
DBGET
integrated database retrieval system
