Ruditapes philippinarum (Manila clam): 132716251
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Entry
132716251 CDS
T09557
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132716251
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132716251
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132716251
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
zf-C2H2_DHX34
OB_NTP_bind
HA2_C
DEAD
AAA_22
HA2_N
Zf_2nd_IFT121
Ima1_N
nSTAND3
AAA_19
AAA_25
AcetylCoA_hydro
AAA_23
Motif
Other DBs
NCBI-GeneID:
132716251
NCBI-ProteinID:
XP_060555470
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
ITFFVLFYRGSKEYDDFWVFVEKYENFQKRQKDRNPKTKPCVTGESSLGIPSHYDKRYRI
NIALKNRDVEDFIKKGRLADADIDEEITVERVKEFKNILLHYLDFQQKQKLSKLKKVKAD
QENLPIFQHKSEIVELVRDNQVVIIAGDTGCGKSTQVPQYLLQAGYEKIACTQPRRIACV
SLSKRVGYETLNEYGSDVAFQVRRKMYTSKHKRYSFLTEGLLLRQMTSDPHLSMYNVIVI
DEVHERHIHTDFLLGILKCLVHHRDDVKVVLMSATINIDLFSNYFEDAPVMKVPGRLYPI
EMEFCPIQKDSDTRTERLDPSPYLKIMQRIEKKYPRSERGDLLIFLSGQKEIMSVVEAAR
AYTQQTKTWIVLPLHSALSVDEQEKVFDIAPEGVRKCIVSTNIAETSVTIDGVRFIVDSG
KVKEMSFDPKYKMQRLQEFSISRASAEQRKGRAGRTGPGVCFRLYDEKEYESYQEYTTPE
IQRVPLDSLVLQMISMGLPDPRKFPFIEAPSIQSLENAIIFLREQGALFEDESLTPIGLM
LSKLPVDVVIGKMLIMGSIFHMIDPVLSIAAAMSVQSPFTSKMYTDVDSMAARKSLESEH
GDPFTLLNAFDEWIQVKADGRGTKKWCKRRGLEEQRFYEMTKLKRQFKELLQDHGLLEKV
EEQQQYMSSAERRQKHGERKRLSELRREQRKESKKRKVLKMDDEDYQISDGEDEKDSDIK
DLEFRLSHNLQQLQETSNESRRFTLRDINLLKIILCSGLYPQVSIADDCNTFKSTSEQAF
HTKSKPFVLLHPTSVFSYKPELLHPKHDTESGKHNPADLKGLLSNKHELLTFVSILETNK
PFLINTMRVPALQTVTLFSNNIDTNTNCTRLICDGWLEVTIPDEESAEQVMSSVIQLRAT
WQNLLKLRLEDTFLSMESERRISQRARKLERTLASKLTEFLSSDVRYTLRRVLAAEMKNV
YIGPERTRGEIKDVFNSASESKPHPTKGGLIINEYLTHGCLLDDGTASVVGEFTMTMQRH
WTCPRCNVSMVASIGERLEHEAMCHASNITATQSEDKADQEEERNMQMNPLRKSYFCAEC
DKQLQLTMTEILKHKKSHLDNTGIM
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
ataactttttttgtattattttacagaggaagtaaagaatatgatgacttttgggtgttt
gttgaaaaatatgaaaacttccaaaaacgacaaaaagatagaaatccaaagaccaaacca
tgtgtgacaggagagtctagtcttggtataccatctcactatgataaaagataccgtata
aacatagccttgaaaaacagagatgttgaagattttattaaaaaagggaggcttgcagat
gcggacattgatgaagagataacagttgagagagtgaaggaatttaagaatatattattg
cactaccttgactttcaacagaaacaaaagttatccaagttgaagaaagtaaaggcggac
caggagaatctgccgatcttccagcacaagtcggaaatagtagagcttgtacgagacaat
caggtcgttataatcgcaggagatactggctgtggcaagtctactcaggtacctcagtat
ttactgcaggcgggttatgagaagatagcatgtactcagcctcggaggatagcttgtgtt
tcactgtcaaagcgtgtgggatatgaaactctgaacgagtatggctctgatgttgctttc
caggtaaggaggaaaatgtatacgagcaaacacaaacgctactctttcttgactgaaggt
ttattgttacgtcagatgacgtcagatccgcacctgtcaatgtataacgtgatagtcatt
gatgaagttcatgagcggcacattcacacagacttcctgcttggcattctcaaatgtctc
gtacatcaccgtgatgatgtgaaggttgtgctgatgtcagcaaccatcaacattgatctt
ttcagtaattattttgaagatgctccagttatgaaggtacctggacgactatatcctata
gagatggagttttgtcctatacagaaggacagtgatacaaggacagagagactggacccc
tcaccatatctcaaaattatgcagagaattgagaaaaagtaccctcgttcagaacgtgga
gatctacttatatttctgagcggccagaaagaaataatgtctgtagtagaggcagctagg
gcgtacactcaacaaacaaaaacatggatagtgctgccccttcatagtgcactctctgtt
gatgaacaggaaaaggtgtttgacattgcacctgagggtgtaagaaagtgtatagtctca
accaacattgctgagacctctgtaactatagatggtgtgaggtttatagtcgattctggg
aaggtgaaggagatgagttttgatccgaagtacaaaatgcagagactacaggagttctct
ataagcagagctagtgctgaacagagaaaaggcagagcaggtaggacaggaccaggtgtt
tgctttagattatatgatgagaaagaatatgaaagttaccaggagtataccaccccagag
atccaacgtgtcccgctagactctcttgtactacaaatgatctcaatgggcttgcctgac
cctcgcaagtttccattcatcgaagcccctagtatccagagtcttgaaaacgcaattatt
tttctgcgagaacaaggtgctttatttgaggatgaaagtcttaccccaatagggttgatg
ttgtctaaactacctgttgatgttgtcattggaaaaatgcttattatgggatccatattt
catatgattgaccctgtgttgtctatagcagcagctatgagtgtacagtcaccttttacc
agcaaaatgtacactgatgttgactccatggctgccaggaaaagtttagaatcagaacat
ggtgaccctttcacattactcaacgcctttgatgaatggattcaggtaaaagctgatggt
cgagggacaaagaaatggtgtaagaggcgaggtttggaagagcaaagattttatgaaatg
actaaactgaagagacagtttaaagaattactacaggatcatggtttacttgagaaagtc
gaggaacaacagcagtatatgagtagtgctgaacgtcggcagaaacatggcgagagaaaa
cgtcttagtgagttaagaagagaacagagaaaagaatcaaagaaacgaaaagtccttaag
atggatgacgaggattatcagatcagtgatggagaggatgaaaaagactcggacatcaaa
gatcttgagttccgactctctcataatttgcaacagcttcaggaaacatcaaatgagagt
cgacgttttacactccgtgatataaatctattaaagatcatattatgtagtggactatat
cctcaggtatcaatagctgatgactgtaacacatttaaatctacctccgaacaagcattc
catacaaagagtaaaccatttgtattgctacaccctaccagtgttttctcttacaaacca
gagttacttcatcccaaacatgacactgagtcaggaaaacataatccagcagatcttaaa
ggacttctcagcaataaacatgaacttttaacttttgtatctattcttgaaacaaacaag
ccatttttgataaacacaatgagggtgcctgccttacagactgtgactttattttctaac
aacattgacacaaacactaactgtacaaggttaatatgtgatgggtggttagaggtaact
atacctgatgaggaatcagcagaacaagtaatgtctagtgtgatacagctgagagccacc
tggcaaaacttactcaaactacgacttgaagacacatttctgtctatggagtctgaacga
aggatcagtcagcgggcaaggaaactggagagaacgttggcaagtaaactgacagagttt
ctcagttcagatgtgaggtatacactccggagagtactggctgctgagatgaaaaatgtc
tacattggacctgaaagaacacgtggagaaataaaagatgtatttaattcagcctctgaa
agtaagccacatccaactaaaggtggacttataatcaatgaatatctcacacatggctgt
ttattagatgatggcacagcgagtgttgttggagagttcacaatgaccatgcaacgtcac
tggacgtgtcctagatgtaatgtttccatggtagccagtattggggagagattggaacat
gaagcaatgtgtcatgccagtaacattacagccactcaatcagaagataaggcggatcag
gaggaggagcgtaatatgcaaatgaatccacttagaaagtcctacttttgtgctgaatgt
gacaaacaactacagctcaccatgacggaaatattaaaacataaaaagtcacatttggat
aacactggaatcatgtag
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