Ruditapes philippinarum (Manila clam): 132716327
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Entry
132716327 CDS
T09557
Name
(RefSeq) cartilage intermediate layer protein 1-like
KO
K24436
cartilage intermediate layer protein
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
rphi04990
]
132716327
Domain-containing proteins not elsewhere classified [BR:
rphi04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
132716327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
TSP_1
CILP_C
Ig_3
CILP
TSP1_spondin
Ig_2
I-set
VWA_2
ig
TSP1_CFP_C
CarboxypepD_reg
CILP_8th
V-set
TSP1_ADAMTS
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
132716327
NCBI-ProteinID:
XP_060555560
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MGMFVTIVVACIFSKLNYVSTSGCTNSPMDIVLLLDSSDGQTHFDEEKQFSSRLINDLWD
GSNRFGMITFGSTPNIQFDLETYQSVSETQLAVEYIWQSSGKAEVGKALDYSINHGFQEI
NGGRRLAPDVVLLITSSDIYDKSYIQNISLAAASTGSQLYVVLVGYHISTFWYEKLTTKE
KIIKVASETNSLMKELGNVKSSICKGRGILREWSEWTVCGSLCGPGLRRRFRKCEKRKPI
DIDCDGELMHEERCFNTPCTKPVDGSWSFWDDWTDCSKTCGNGTQIKTRTCTAPFPENGG
KTCPGNSKKSKSCAEWPCPDCSRTCPPGTKLSLSCDVCTATGIVLFGYVRSFLNRTIEGA
QIFVKSKMYESLTTSDEYGFFSVHGVYVADESIAIRRKGYSGVDGKAKQVNQTHWVFNST
MLEEVAPLFLLHPTSKKRLVGQSVSICCRATGQPPPAIYTWYKGLESLGTRGLNGTLVFR
SVSLSDKGEYYCSTETDAGSSTSNKATLTVSIGATDTCERPKPLYEALPDGCYVKDDMSK
NSTINVGTCGQDSCVTKSLADNFTCTEWWPHYCCDSNADASVDVQCDGFQYKASIVSSCT
CRKCYKKTVITGNAFGRAENGSILPLKFGTIYVYGKQKAMTNIVGYFSFEIPFDFEKIIV
RFADNIYKTFIDTTKNIELEPGKSTSISIALPLRPKKIEFRSDSEFAVQVGSSKGLKSPG
GITIPRNSLSTVDGVPYIGKANAQVHFMDPRILEDFEASSGEFSFQEEGENCPLETYGVI
KTNFEDDKENQLILNKPIQFEIDPTVMNISNSNSGDSNVELWKFDENTGTWKSVDKMKSK
VTPFRRRLLDQMYVGSDTSGQYVPPIELEHPAEYATKTVLDYTKEVKRVIYYKNYYRSWW
WRTYNIDSRVITNKIQIYKTVTTISRAYSVERGACFVRVTVFSDLSGNTIAKDMVSVTAV
TKDILKDKYKGFETQPIKNGRKCLKIFCDSEVYLYAEKAGSRLIAFPKHDLPYGYNSTNI
KNSTEVVLNSRNFETVGGRNGPVYYFEDEKECTNSPDSFEFRFGMRFGKDPKLNLQVSEN
IYDKKQSWHPVPPDNDNTLQVCYLKVMLKIQGHFDIRLIGISRKENASGEQYGMYNVAPQ
PDKTYSTLDERAACVEFRCPGIVNDAGKITKNVATHLEVRLNPKPKIPCRIRPLNKNISI
TEITSGYGFDFLAEAEDSYGPKYGVYIYQSSKTNAQNFCFQGTNSGSFGNGMLPSVNAAV
EIDCL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggggatgttcgttacaattgtagtagcatgtatattttcaaaactgaattatgtctca
acttcaggctgcacgaattcgcctatggatattgttttgttactagactcatccgacggt
caaactcatttcgatgaggaaaaacagttctcctcaagattgataaatgacttatgggat
ggaagcaaccgctttggtatgataacatttggaagtactcccaatatacagttcgattta
gaaacataccaatctgtttctgaaactcagcttgcagtggaatatatttggcaaagcagt
ggaaaagctgaggttggcaaggcactcgactacagtataaaccatggttttcaagagata
aatggtggaaggcgtctggcaccagatgtagtgctcctaattacatcatctgacatatat
gacaagtcatatattcaaaatatttctttggcagcagcgtcaacaggatcacagctttat
gtcgttttagttgggtatcacatcagcacattttggtatgaaaaactaactaccaaagaa
aaaatcattaaggttgcttctgaaacgaatagtctaatgaaagaactcggcaatgttaaa
agttctatttgtaaaggaagaggcatattaagagaatggtctgaatggactgtgtgtgga
tctctctgtggacctgggttgaggaggcgtttcagaaaatgtgaaaaaaggaaacctatt
gatatagactgtgatggagaattgatgcacgaagagcgctgtttcaatacaccgtgtact
aagcccgtagacggttcttggtcattttgggatgattggacagactgctctaaaacctgt
ggaaatggtacccagataaagactcgaacatgtactgccccgtttccagagaacggtggc
aaaacatgtccaggtaactcgaagaagagtaaatcatgcgcagaatggccatgcccagac
tgtagtaggacttgccctcctggtactaagttatctttatcatgcgatgtatgtacagct
actggtattgtgttatttggatatgtgagatcgtttttgaacaggacaatagaaggtgca
cagatttttgtaaaatcaaaaatgtacgagtcattaacaacatcagatgagtatggcttc
ttcagtgttcatggagtatatgttgcagatgaaagtattgcaataaggaggaaaggttac
tccggcgttgatgggaaagcaaagcaggttaatcaaacccactgggttttcaattcaaca
atgttggaagaagttgcaccgctttttcttttacatcctacgagtaaaaagcgtcttgtt
ggccaaagtgtttcaatatgctgtagagccaccgggcaacctccgccagcgatatataca
tggtacaaaggtctagagtctcttggtacacgaggtttgaacggcacactcgtattcaga
agcgtaagtttgtccgacaaaggagaatattattgctcgactgaaacagatgcagggtca
tcaacgtcaaataaagctacgttaacagtgtcaattggcgcaactgatacatgtgaaagg
ccaaagccgttgtatgaagcgcttccagatggttgctacgttaaagatgacatgagcaaa
aattccacaattaatgttggtacatgcggacaagattcatgtgtaacaaaaagcctcgct
gacaattttacatgtacagaatggtggccgcattattgctgtgattctaatgccgatgcc
tcagttgatgtacaatgtgatggctttcagtacaaggcttctatagtttcttcttgtaca
tgtcgaaaatgttataagaaaacagtcataacaggaaacgcgtttgggcgcgcagaaaac
ggctctatcttgcctttaaagtttggaacaatttatgtttatggaaaacagaaggccatg
accaacattgtggggtatttttcttttgaaattccatttgactttgaaaaaataattgtt
cgattcgcagataacatatataaaacctttattgacacaacaaaaaacatagaacttgag
cccggaaaaagcacatcaatcagtatagccttgccacttcgtccgaagaaaatcgaattc
cgatctgattcggagtttgcagtccaagtcgggtcctctaagggcctgaaatctccaggt
ggtataacaattccaaggaactccctatctacagttgatggtgtaccatacataggtaaa
gctaatgctcaagttcatttcatggaccccagaatccttgaggactttgaggcatccagt
ggtgaattttcgtttcaagaagaaggggaaaattgtccgttagaaacatatggagttata
aaaaccaattttgaggatgataaagaaaaccaattgatcttgaataaacccatacaattt
gaaatagaccctacagttatgaacatttccaacagtaattcaggggactcaaatgttgaa
ttatggaaatttgatgaaaatactggcacatggaaatctgttgacaaaatgaagtcaaaa
gtaaccccattcagaagacgtcttcttgatcaaatgtatgttgggtcagatacgagtggt
caatatgttccgccgattgagctagaacaccctgctgaatatgcgacaaaaaccgtactc
gattatactaaagaggtcaaacgggtgatatattataaaaactattacagatcttggtgg
tggagaacgtataacattgatagtcgagtaataacaaataaaatccaaatttataagaca
gtcacaacaatttcaagagcatattcagtcgagaggggggcatgttttgtaagagtcact
gtattttcagatttaagcggaaacaccattgcaaaagacatggtatccgtaactgcagtt
acgaaagatatcttaaaagataaatataaaggttttgaaacacaaccaataaagaatgga
cgtaaatgtttaaagatattttgtgattctgaagtttacttgtatgcagagaaagctgga
tcgcgactcattgcatttccaaaacacgatctaccgtatggatataattcaactaatatt
aaaaactcaacagaagttgttcttaattcaagaaattttgaaactgttggcggtagaaat
gggcctgtttactattttgaagacgaaaaagaatgcactaattcaccagatagctttgaa
tttcgttttggtatgcgttttggcaaagacccgaaattaaatcttcaagtatcagagaat
atttatgacaagaaacagtcatggcatcctgttcctccagacaacgataacacattacaa
gtgtgttatttaaaggttatgctgaagatacaaggacattttgacattcgtttaattgga
attagtcgtaaagaaaatgcttcaggagaacagtacgggatgtacaacgtcgccccacaa
ccagataaaacatattcaacattagatgaaagggctgcatgtgttgaattccgatgtcct
ggaattgttaacgatgctggtaaaatcacgaaaaacgtagcaacacatcttgaggttaga
cttaatccaaagccaaaaataccctgtcgaatcagaccattgaataagaacatttcaatc
actgaaattacatctggctatggatttgattttcttgctgaggctgaagatagttacggc
ccaaaatacggggtttatatttaccagagcagtaaaactaatgcacaaaacttctgcttt
caaggaacaaactctggatcgtttggtaacggcatgttaccttctgttaatgcagctgtt
gaaattgattgtttataa
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