Ruditapes philippinarum (Manila clam): 132716359
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Entry
132716359 CDS
T09557
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rphi03000
]
132716359
04121 Ubiquitin system [BR:
rphi04121
]
132716359
Transcription factors [BR:
rphi03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
132716359
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
132716359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZBED1_RNase-like
ZBED1_RNase-like_helical
DUF8247
FAM200-ZBED5_RNase-like
Motif
Other DBs
NCBI-GeneID:
132716359
NCBI-ProteinID:
XP_060555605
LinkDB
All DBs
Position
Unknown
AA seq
342 aa
AA seq
DB search
MIHVLEPRYKLPSRTHFSEKVIPSLWKKVEDRVRKRLQTADSIAITTDSWTSRATENYVA
VTAHFINSNWQVENYTLETKLFSDSHTAQNLASGLHDTVTSWQLERNGKGPAISTDNASN
IVRAVKDSGLSPHVGCFAHTLNLATQRGLKVSQVDRLLGRVRRVVTFFHKSTSATSILKV
MQEKLDLPNHKLLMDVPTSQKHPTVSLIHPLKEMLLRQLEVLPSDNMLVSDIKSAISNDL
KQRYTDENILGFLLQASALDPRFKSLPYLDDRSRCAVYDNIQSAAELLQSDSSCQNVTVK
SEPDETPTSSQASEATTIDVPVLPSLSTLGEGEPPLKVKKEN
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgattcatgttttggaaccaagatacaaacttcctagccgcacacatttcagtgaaaaa
gtcattccctcactgtggaaaaaagttgaagatagggtaaggaagcggcttcaaactgca
gactccattgccataaccactgactcatggacatctcgagccacagaaaattatgtagct
gtaactgcccattttattaatagcaactggcaggttgaaaattacactcttgaaacaaaa
ttatttagtgattctcatacagctcaaaatttggcaagtggtctacatgacacagtaaca
tcctggcaacttgaacgcaatggcaaaggtcctgctatatctactgacaacgcaagtaat
attgttcgtgctgttaaggactcgggtttgagtccacatgttgggtgttttgcccacacg
ttgaatctagcaacacaacgtggactgaaagtttcacaagttgacagacttttgggtagg
gtgaggcgtgtggtaacattctttcataaaagcacttctgctactagtattttgaaggta
atgcaggagaaacttgatctccctaatcacaaactactaatggatgttccaaccagccag
aaacatcctactgtgtcactgatacaccccctaaaggaaatgctgttacgacaacttgag
gtcttgccttctgacaacatgttggtatcagacataaaatcagcaatcagcaatgatctc
aagcaaaggtatactgatgaaaacattttggggttccttttacaagcttctgccctggat
ccacggtttaagagtctaccttacttggatgatagatctaggtgtgcagtatatgataat
atacaatcagcagcagaattactacagagtgactcaagctgtcagaatgtgactgttaaa
agtgaacctgatgagacacccacatctagccaggctagtgaggctactaccattgatgta
ccagtactcccttcattatccacactgggggaaggagaaccaccacttaaagtaaagaaa
gaaaactga
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